barSeed - Barley Seed Development Database

Probe CUST_11747_PI390587928

Source Contig U35_4308

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11747_PI390587928	Hv_44K_v2	TCATGTATAAATATGTTGTCGCGAACATCCTTCCTTTATGAATGGTTCTGAAATGTGCAC	611	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.235	3.344	2.986	1.109	0.177	0.157
Raw	50.615	228.092	167.597	97.469	3.854	3.043

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_14381.1	773	2e-24	671 - 730	100	60 / 60	plus	None
JLOC1	JLOC1_9825.1	713	8e-25	636 - 695	100	60 / 60	plus
Harvest21	ABC00055	2553	3e-25	1 - 60	100	60 / 60	minus
Harvest35	U35_4308	671	3e-25	612 - 671	100	60 / 60	plus

Contig Sequence (671 bp)

>U35_4308 671 Hv_44K_v2
CCGTCCCAAACTTCACAAAGCCCATCGATTGATCCAAGGTCAGATAGCAACAACCCCCAA
CACCATGAGAACCACCCTCTTCCTTGCAGCCATTGTCATCATCGTCCATGTCGTTGCTAC
CCCAACCACAGCAATCCCCGGGGGCTGGGTTAATATCAAGAACATTGCTGACCCGCACAT
CCAGGAGCTTGGCAAGTGGGCAGTATTGGAGCACACCCAATTGGGGGGCAATGATGGGCT
CAGGTTTGTGAAGGTGGTGAGCGCTGAGGAGCAGATTGTGAATGGTGTAAACTATCAGCT
CGTCATTGACGCCTTGAGACTCGATGGCTCACATAGGACATACAAGGCAGTGTTGTTCGA
GAAGGATTCTAGTAACGCGAAGACACGAAAGTTCATATCTTTCACCCCGGCAAACTGAGT
GTTGCCAATCCGATGATATTTAGCCTAGTCGTATCATTTTGAACGTAATAAAAAATGTCA
AAGAATTGATGTGGTGTTTCTACCTAACACAATATGGAAATTAGTCATCGAAAAAAAAAA
AAAAAAACTTTTTTAGGCCATAATGGGAGCATGCATGTTGTCACTTAAACTCGTTGCTAT
AACGAACAATCTCATGTATAAATATGTTGTCGCGAACATCCTTCCTTTATGAATGGTTCT
GAAATGTGCAC

Homology of Contig U35_4308 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None