barSeed - Barley Seed Development Database

Probe CUST_1172_PI390587928

Source Contig U35_21130

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1172_PI390587928	Hv_44K_v2	GGTTGATCTGTGGAATGTGGACGCAATGTAAGATAATTTGTGATGTGTGAAAGTGATCTC	740	GeneList: darkolivegreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.365	0.637	1.027	1.602	0.956	1.832
Raw	235.183	624.417	917.272	2238.034	470.905	987.729

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_12222.2	1113	4e-23	831 - 891	98	60 / 61	plus
JLOC1	JLOC1_12222.1	937	4e-23	655 - 715	98	60 / 61	plus
Harvest21	ABC14446	826	3e-25	27 - 86	100	60 / 60	minus	ABC14446
Harvest35	U35_21130	826	3e-25	741 - 800	100	60 / 60	plus

Contig Sequence (826 bp)

>U35_21130 826 Hv_44K_v2
GGCGGAACTGCCAGATATAGACAGCGAGGAACCCTAACCCTAACCAGTGGTTCAGATCCG
CAAGGTTGGTTCCAACCCTTCCAATCTGCAGGGAGGTTCCAACCCTGATTTATCGAGTCT
TGGCTGGTTAATTCGTGCTTGTTTGCAGGCCTGCGACTATGGCGGGTTTCTCCCTAGTCC
GCGAGGCGGGACGAGGGTCCTGCGTCCGGCAGGTGAGGGGTTTCGCCAGCTCGTCCCCGT
CCCGCAGCATTCCGGATACACACGTGCCTTTCGGGGAGGACACCGTGCAACGCAAATCCA
GCAGAAGAAAGAGGAGCTGTATGATCTCATCGCTGACGCCCAGGCCAAATCCGCGGCTTC
CCAGCGAGACAGATTTGTGCTCAAGACTCTCTGCACACAAGTCAAGCCCAGGCCACATGA
CCCTCAATGGCGCGAGATAATTACAGTCAAGAAGGCTAGCAAGCGGGCTGCATTTGCGTT
TGTTTTTGTTACTGGCTGCATCACTCTTGGTGGCCTTGCTCAGGGTGCGCGCAATGAAGT
GGAGCATGAGATGTGCATGCCAGTGGAGCAGCGCAGAATCTGAAGGGAACTGCAGAAGCA
AGTGGAGTGAAGACGAAGCATCTTGTTTGATGGAGAAGCAAGACGGATATCAGTTTTTTT
CCTGCACTATATTATGCATGTCTCTTGTACTATATATATGTCTATGATCTGCCACCTATG
ACTTGAGTAGTATTATTACTGGTTGATCTGTGGAATGTGGACGCAATGTAAGATAATTTG
TGATGTGTGAAAGTGATCTCNAAGTATTGCAAAAAAAAAAAAAAAA

Homology of Contig U35_21130 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None