- Probe CUST_11718_PI390587928
- Source Contig U35_31693
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_11718_PI390587928 | Hv_44K_v2 | TCAAGGACTTCATCCACGACATCGGGGAGAAGATCGAGGAGGCGGTGGGGTTCGGCAAGC | 187 | GeneList: skyblue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.513 | 0.864 | 2.421 | 2.436 | 1.231 | 1.074 |
| Raw | 53.776 | 130.332 | 344.052 | 525.444 | 101.033 | 93.709 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK251906.1 | 1512 | 2e-24 | 394 - 453 | 100 | 60 / 60 | plus | ABC04240 ABC04242 |
| MLOC | MLOC_12760.2 | 1243 | 2e-24 | 693 - 752 | 100 | 60 / 60 | minus | ABC04240 ABC04242 |
| MLOC | MLOC_12760.3 | 1510 | 2e-24 | 960 - 1019 | 100 | 60 / 60 | minus | ABC04240 ABC04242 |
| MLOC | MLOC_12760.1 | 4125 | 2e-24 | 3603 - 3662 | 100 | 60 / 60 | minus | ABC04240 ABC04242 |
| JLOC1 | JLOC1_8573.2 | 3554 | 8e-25 | 496 - 555 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_8573.1 | 3222 | 8e-25 | 431 - 490 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_8572.5 | 4160 | 8e-25 | 3663 - 3722 | 100 | 60 / 60 | minus | |
| JLOC1 | JLOC1_8572.3 | 4198 | 8e-25 | 3701 - 3760 | 100 | 60 / 60 | minus | |
| JLOC1 | JLOC1_8572.2 | 3885 | 8e-25 | 3388 - 3447 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC04241 | 581 | 3e-25 | 109 - 168 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC04240 | 1595 | 3e-25 | 459 - 518 | 100 | 60 / 60 | plus | ABC04240 |
| Harvest21 | ABC04239 | 702 | 3e-25 | 258 - 317 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC52883 | 391 | 8e-21 | 1 - 52 | 100 | 52 / 52 | plus | |
| Harvest35 | U35_31693 | 499 | 3e-25 | 188 - 247 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_1116 | 872 | 3e-25 | 385 - 444 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_1115 | 581 | 3e-25 | 109 - 168 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_1114 | 1758 | 3e-25 | 459 - 518 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_50631 | 391 | 8e-21 | 1 - 52 | 100 | 52 / 52 | plus |
Contig Sequence (499 bp)
>U35_31693 499 Hv_44K_v2 ATTTTGATTCCCGCATCTCCACTTTCCATCTCCGCCGGCCGGGATCTGAAGCAAGCAAGC TCCGATCTTGCCAGCCAGCCAGCGGCCATGTCTTCCTCGTCGGACAACCCCAACGAAGTC ACCGACCGCGGCCTCTTCTCCAGCAAGAGCAACAAGGAGGAGGGCGGCGGCGGGTTCATC GACAAGGTCAAGGACTTCATCCACGACATCGGGGAGAAGATCGAGGAGGCGGTGGGGTTC GGCAAGCCCAGCGCCGACGTCGCCCGGATCCACGTGCCCCACATCGGCCTCCACCGCGCC GACCTCGTCGTCGACGTCCTCATCAAGAACCCCAACCCGGTCCCCATCCCGCTCGTCGAC ATCGACTACCTCATCGACAGCGACGGCCGGAAGCTCGTCGCCGGCCTCATCCCGGACGCC GGCACCGTCCGCGCCCACGGCGAGGAGACGGTCAAGGTGCCCATCACGCTCGACTTCGAN ACATCCGCAGCACTACGCC
Homology of Contig U35_31693 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os03g62620.4 | 317 | 9e-59 | protein|late embryogenesis abundant protein, putative, expressed |
| Brachypodium v1_2 | Bradi1g02090.2 | 327 | 4e-59 | |
| Arabidopsis v10 | AT2G44060.1 | 325 | 5e-54 | Late embryogenesis abundant protein, group 2 | chr2:18226922-18227988 FORWARD LENGTH=325 |