- Probe CUST_11713_PI390587928
- Source Contig U35_31699
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_11713_PI390587928 | Hv_44K_v2 | AACTGAAACATCTTAGTAGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGC | 173 | GeneList: darkmagenta MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 8.441 | 5.700 | 1.285 | 0.664 | 0.471 | 0.616 |
| Raw | 69634.233 | 61604.167 | 14536.400 | 10728.233 | 2941.010 | 4231.417 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest21 | ABC53060 | 250 | 3e-25 | 138 - 197 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC53056 | 419 | 3e-25 | 142 - 201 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC53051 | 452 | 3e-25 | 142 - 201 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC53050 | 274 | 3e-25 | 119 - 178 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC53036 | 566 | 3e-25 | 150 - 209 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC53031 | 236 | 3e-25 | 143 - 202 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC27063 | 681 | 3e-25 | 155 - 214 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC02154 | 496 | 3e-25 | 158 - 217 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC41549 | 195 | 1e-23 | 77 - 136 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC02153 | 228 | 1e-23 | 132 - 191 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC53049 | 355 | 5e-23 | 134 - 193 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC41751 | 286 | 6e-22 | 53 - 112 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC41510 | 211 | 6e-22 | 80 - 139 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC41472 | 243 | 6e-22 | 137 - 196 | 97 | 58 / 60 | plus | |
| Harvest35 | U35_31699 | 448 | 3e-25 | 174 - 233 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_28281 | 681 | 3e-25 | 155 - 214 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_451 | 1864 | 3e-25 | 88 - 147 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_419 | 2235 | 3e-25 | 376 - 435 | 100 | 60 / 60 | plus |
Contig Sequence (448 bp)
>U35_31699 448 Hv_44K_v2 CAAAAGAGGAAAGGCTTGCGGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGCA AGCGACGAAATGCTTCGGGGAGTTGAAAATAAGCATAGATCCGGAGATTCCCAAATAGGT CAACCTTTTAAACTGCCTGCTGAATCCATGAGCAGGCAAGAGACAACCTGGCGAACTGAA ACATCTTAGTAGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAA ATGGGAGCAGCCTAAACCGTGAAAACGGGGTTGTGGGAGAGCAATACAAGCGTTGTGCTG CTAGGCGAAGCGGTTGAGTGCCGCACCCTAGATGGCTAAAGTTGACTGGACATCTAGGGG TAAAGCACTGTTTCGGTGCGGGCTGCGCGAGCGGTACCAAATCGAGGCANACTCTGAATA CTAGATATGACCCANAATAACAGGGGTC
Homology of Contig U35_31699 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |