- Probe CUST_11709_PI390587928
- Source Contig U35_43673
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_11709_PI390587928 | Hv_44K_v2 | TGCATGCCACATCTTACCGATGGTTAGAAAATTCAGGCACCGTAATGTTTTCTTAAAAAA | 4 | GeneList: lightsteelblue1 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 37.294 | 13.841 | 1.423 | 0.527 | 0.397 | 0.353 |
| Raw | 652.194 | 329.414 | 33.907 | 19.720 | 3.247 | 3.319 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest21 | ABC40611 | 165 | 3e-25 | 5 - 64 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_43673 | 165 | 3e-25 | 5 - 64 | 100 | 60 / 60 | minus |
Contig Sequence (165 bp)
>U35_43673 165 Hv_44K_v2 TTTTTTTTTTAAGAAAACATTACGGTGCCTGAATTTTCTAACCATCGGTAAGATGTGGCA TGCATCGCACTCGTCCAAGTTTACACAGCATGCGGGCTGATGGAAGAACTTGCTAGCCTC TCTGACGACGCTACCCAAGCTGCCGATCGCCATGCCATGCATGAG
Homology of Contig U35_43673 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |