- Probe CUST_11702_PI390587928
- Source Contig U35_29384
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_11702_PI390587928 | Hv_44K_v2 | TATGTACCCACCGTGTTCCTGCTATTGCCATGTGTATGCCAATTTATTCTTTTGAAAAAA | 24 | GeneList: blue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.771 | 1.952 | 1.069 | 0.839 | 0.232 | 0.216 |
| Raw | 275.906 | 489.450 | 226.751 | 290.269 | 27.477 | 28.457 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_34538.1 | 977 | 6e-24 | 787 - 845 | 100 | 59 / 59 | plus | ABC28650 |
| JLOC1 | JLOC1_22282.1 | 1087 | 3e-24 | 778 - 836 | 100 | 59 / 59 | plus | |
| Harvest21 | ABC28650 | 511 | 3e-25 | 25 - 84 | 100 | 60 / 60 | minus | ABC28650 |
| Harvest35 | U35_29384 | 511 | 3e-25 | 25 - 84 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_12747 | 661 | 1e-24 | 543 - 601 | 100 | 59 / 59 | plus |
Contig Sequence (511 bp)
>U35_29384 511 Hv_44K_v2 TCGCGAGGGCCGCCCTTTTTTTTTTTTTTTCAAAAGAATAAATTGGCATACACATGGCAA TAGCAGGAACACGGTGGGTACATAGAAGCTAGTGACAAACGAAAACGATAACAGTCGTTA ATTTTGTTGGATCATCAATGTTGTAGCAGCAAAAACGCATAGAGTGCTTAATTAGGCGCT CACACGGCCACACCTCCTCTCCGCCGATGGTCTGCCGTACGTGCGCGAGATGGACGAGGC CGGGATGCGTAGGACGCGATCAGACCATGTTGCGGGCGCAGCGCGTGATGGCGGAGCAGC CGCGCGTGTAGGGGTTCATCTGCTGCATGGAGCCGCAGTTGGTGTAGTAGGACTTGTCGC GCTTATTGCAGGGGATCTGGTCGGCGCGCAGCGCCGCGTAGCTGATGTACCTGGCCGTCG GCTTCCGCGCCAGCGACCGGCGCAGGGCCTCGCCGGTGCCGGCGGCGCCCGTCCCCATCT CCTAGTCCTCGTCTACGCCGCACTCCCCGAC
Homology of Contig U35_29384 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |