- Probe CUST_11696_PI390587928
- Source Contig U35_29389
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_11696_PI390587928 | Hv_44K_v2 | TAGAAAGTGAACGACTTCGTTATGACTTTCAACCTTCGCCCTTGATGCGTTGCTATTGCG | 478 | GeneList: plum1 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.035 | 0.039 | 0.650 | 1.645 | 1.940 | 2.002 |
| Raw | 4.448 | 6.940 | 142.333 | 577.155 | 221.145 | 251.707 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK375666 | 977 | 2e-24 | 654 - 713 | 100 | 60 / 60 | plus | ABC35324 |
| MLOC | MLOC_39502.1 | 657 | 2e-24 | 362 - 421 | 100 | 60 / 60 | plus | ABC35324 |
| JLOC1 | JLOC1_25759.1 | 769 | 8e-25 | 363 - 422 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC28656 | 568 | 3e-25 | 479 - 538 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_29389 | 568 | 3e-25 | 479 - 538 | 100 | 60 / 60 | plus |
Contig Sequence (568 bp)
>U35_29389 568 Hv_44K_v2 CCGCAGCCGAGCTACTGCGAGCAGCTCCTCAAGTCCAGCTCCGCGTCGGACGCGCGCGCG CTGGCCCAGGCCAGGCGTCGCCGCCGCCTCTAAGGCGGCCACCGAGGCTGCTACCGCCGC CAAAGCGGAGCGGGACAAACTCCCCAACAACAAGACGCAGTGGCGGTGCATGGACAGCTG CGCGTCGGGGTTCGATGAGGCGACGAATAAGTTTAAGCCAGCCGCTGGCGGGAACGCCAC GGGAGTCGACGCGGGTCTCACGGACGTGCTCGACTTCATCGTGGTGGATGAAGACGTGGA GAAGTCCAAGGACTGGGAGTGGAAGTGGAGCTGCAACGAGTGCAAGGCGGATCCCACGGC GCCGGCAGGACTCGTCGCCAAGAACAAGGAGTTCGACAAGATCATGGAGGTCCTGCCTGC CATCATCAAGCAGGCAGTCGAGGGCAAGGACAATTCCACTAAATCGGCCACCAAATCCTA GAAAGTGAACGACTTCGTTATGACTTTCAACCTTCGCCCTTGATGCGTTGCTATTGCGCC ATCCCGTCTGGTCCACACCAACAGCGAG
Homology of Contig U35_29389 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |