- Probe CUST_11696_PI390587928
- Source Contig U35_29389
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_11696_PI390587928 | Hv_44K_v2 | TAGAAAGTGAACGACTTCGTTATGACTTTCAACCTTCGCCCTTGATGCGTTGCTATTGCG | 478 | GeneList: plum1 MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 0.035 | 0.039 | 0.650 | 1.645 | 1.940 | 2.002 |
Raw | 4.448 | 6.940 | 142.333 | 577.155 | 221.145 | 251.707 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | AK375666 | 977 | 2e-24 | 654 - 713 | 100 | 60 / 60 | plus | ABC35324 |
MLOC | MLOC_39502.1 | 657 | 2e-24 | 362 - 421 | 100 | 60 / 60 | plus | ABC35324 |
JLOC1 | JLOC1_25759.1 | 769 | 8e-25 | 363 - 422 | 100 | 60 / 60 | plus | |
Harvest21 | ABC28656 | 568 | 3e-25 | 479 - 538 | 100 | 60 / 60 | plus | |
Harvest35 | U35_29389 | 568 | 3e-25 | 479 - 538 | 100 | 60 / 60 | plus |
Contig Sequence (568 bp)
>U35_29389 568 Hv_44K_v2 CCGCAGCCGAGCTACTGCGAGCAGCTCCTCAAGTCCAGCTCCGCGTCGGACGCGCGCGCG CTGGCCCAGGCCAGGCGTCGCCGCCGCCTCTAAGGCGGCCACCGAGGCTGCTACCGCCGC CAAAGCGGAGCGGGACAAACTCCCCAACAACAAGACGCAGTGGCGGTGCATGGACAGCTG CGCGTCGGGGTTCGATGAGGCGACGAATAAGTTTAAGCCAGCCGCTGGCGGGAACGCCAC GGGAGTCGACGCGGGTCTCACGGACGTGCTCGACTTCATCGTGGTGGATGAAGACGTGGA GAAGTCCAAGGACTGGGAGTGGAAGTGGAGCTGCAACGAGTGCAAGGCGGATCCCACGGC GCCGGCAGGACTCGTCGCCAAGAACAAGGAGTTCGACAAGATCATGGAGGTCCTGCCTGC CATCATCAAGCAGGCAGTCGAGGGCAAGGACAATTCCACTAAATCGGCCACCAAATCCTA GAAAGTGAACGACTTCGTTATGACTTTCAACCTTCGCCCTTGATGCGTTGCTATTGCGCC ATCCCGTCTGGTCCACACCAACAGCGAG
Homology of Contig U35_29389 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |