barSeed - Barley Seed Development Database

Probe CUST_11684_PI390587928

Source Contig U35_43688

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11684_PI390587928	Hv_44K_v2	TGAGTATTCGTCTTCTACTGGGTTTGGGGACCAATGTATGTTCAGTATCAGAATAAGGAT	417	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.290	1.165	1.145	0.857	0.432	0.435
Raw	307.045	415.806	377.499	435.734	80.246	86.371

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_76680.1	2382	2e-24	1470 - 1529	100	60 / 60	plus	None
MLOC	MLOC_3354.2	918	3e-21	204 - 264	97	59 / 61	plus	None
JLOC1	JLOC1_51136.5	1441	8e-25	1018 - 1077	100	60 / 60	plus
JLOC1	JLOC1_51136.4	2353	8e-25	1241 - 1300	100	60 / 60	plus
JLOC1	JLOC1_51136.3	2536	8e-25	1424 - 1483	100	60 / 60	plus
Harvest21	ABC40636	480	3e-25	418 - 477	100	60 / 60	plus
Harvest35	U35_43688	480	3e-25	418 - 477	100	60 / 60	plus

Contig Sequence (480 bp)

>U35_43688 480 Hv_44K_v2
GCCAACTACCCGGAGGGCACCACCGCGCTGCGGGAGCTCATCCAGAACACCGATGACACA
GGGGCCTCGCGGGTCCTCCTCTGCCTTGCCCGCCGCGCCCACGGCTCCTACTCGCTGCTC
GGCCCGGCGCTCGCGCAATGGCAGGGCCCCGCCCTGCTCGCCCACAATGACGCCGCCTTC
ACCGACAACGACTTCGCCAGCATCTCCCGCATCGGCGGCAGCAAGAAGGCCTCCTAGAAC
TGCATCGAAGGTCTGGTCATCCTTACAAAATATTTCATTGCAGAACTGCATCGAAGATAT
GTTGCTCTGAACATACTTATGACGGCATTATAGTAGATACACAAGCAGTACAGAGGCACA
GGGTGTCAATATTGGAGTGTGTAAAGGTAACAATAAGTATAAATCTGTCCGATATGCTGA
GTATTCGTCTTCTACTGGGTTTGGGGACCAATGTATGTTCAGTATCAGAATAAGGATTCT

Homology of Contig U35_43688 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None