barSeed - Barley Seed Development Database

Probe CUST_11667_PI390587928

Source Contig U35_2602

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11667_PI390587928	Hv_44K_v2	TTCCAAGGAAAGGGAAATAATGGAGGATAAGTTCCTTGCAAAATAACAATAATCGAGTAC	1831	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.696	2.879	1.385	0.724	0.314	0.328
Raw	840.374	1336.054	581.291	460.619	71.614	82.700

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_44515.1	2107	8e-25	1946 - 2005	100	60 / 60	plus
Harvest21	ABC06873	1891	3e-25	1832 - 1891	100	60 / 60	plus	ABC06873
Harvest35	U35_2602	1891	3e-25	1832 - 1891	100	60 / 60	plus

Contig Sequence (1891 bp)

>U35_2602 1891 Hv_44K_v2
TAAATCGCATCGCCAGCCCAGAGCCCGGGGGAACGACACATCGTGAGCGATCCTTGAAGC
CGCCCACAGGCGACAGCCAAGCTCCGCCGCGCCTGCGCTTCCGATCGAATCCGAGGCTTC
TCCTAAATTTCAAGAACATGGTTGTTGCTAATGGCAATGTCGACATGGAGGAAGGGACCC
TTGAAATCGGGATGGAGTATAGGACAGTTTCTGGAGTTGCTGGTCCTCTTGTGATTCTTG
ATAAAGTGAAGGGTCCTAAATACCAAGAAATCGTCAACATACGATTGGGAGATGGCACAA
CTAGGCGTGGTCAGGTGCTTGAAGTTGATGGGGAGAAAGCTGTGGTTCAGGTTTTTGAGG
GGACTTCTGGTATTGACAACAAATATACAACTGTGCAATTCACTGGTGAGGTTCTAAAAA
CTCCAGTATCACTGGATATGCTTGGGCGCATTTTCAATGGTTCTGGGAAACCTATAGATA
ATGGTCCACCAATTTTACCAGAGGCATACCTGGATATTTCCGGAAGTTCTATCAATCCCA
GTGAACGGACATATCCTGAAGAAATGATTCAGACTGGCATATCAACAATTGATGTCATGA
ATTCTATAGCTCGTGGTCAGAAGATTCCTCTGTTCTCCGCTGCAGGTCTCCCACACAATG
AAATTGCTGCTCAGATTTGCCGTCAGGCTGGCCTGGTCAAGCGTAAAGAGAAGACTGATA
ATGTCTTGGAGAATGCTGAGGAGGACAATTTTGCTATTGTCTTTGCCGCTATGGGAGTAA
ACATGGAAACAGCACAATTTTTCAAGCGTGATTTCGAGGAGAATGGTTCGATGGAGAGAG
TTACCTTATTTCTTAATCTGGCAAATGATCCAACCATCGAGCGTATCATTACTCCAAGAA
TTGCTCTTACCACAGCGGAATACTTGGCATATGAGTGTGGAAAGCATGTTCTTGTCATCC
TGACTGACATGAGTTCATATGCAGATGCACTTCGTGAAGTTTCTGCTGCTCGAGAGGAAG
TACCTGGAAGGCGTGGTTATCCCGGTTATATGTATACTGACTTGGCGACTATCTATGAGC
GTGCTGGTCGTATAGAAGGAAGGAAAGGGTCAATTACACAGATACCTATTTTAACCATGC
CTAATGATGATATTACCCATCCAACTCCTGACCTCACTGGTTACATCACCGAGGGGCAGA
TCTACATTGACAGGCAGCTACATAATCGACAGATATACCCACCGATTAATGTCCTTCCCT
CACTTTCGCGGCTCATGAAGAGTGCTATCGGCGAAGGCATGACTCGCCGGGATCATTCTG
ATGTCTCAAACCAGCTATATGCCAATTACGCCATAGGCAAAGACGTCCAGGCGATGAAGG
CCGTGGTCGGAGAGGAAGCACTGTCATCAGAGGACTTGCTCTACCTTGAGTTCCTCGACA
AGTTTGAACGGAAGTTTGTGGCTCAGGGAGCATATGACACGCGAAACATCTTCCAGTCAC
TTGACCTCGCCTGGACCCTACTCCGCATCTTCCCCCGCGAGCTGCTCCACCGTATACCGG
CGAAAACCCTTGATCAGTTTTACAGTCGTGATGCCTCCCACTAAGTCAGAATTTGGGCGC
TATCATGGGAATTGATTGTTGTTTTGTGCAATAAAGTGGCGCTAGGGGCTCAGTTAATAT
ATATTGTGTTATCCTCCCAATTTTTTGTAAAAATTTGTGCTAGCATTAGCAAAACTTCAA
TTATTTTGACAAAAAGAACACGATTTATCTAGCAATTTGGGCAACATTGATGTCGGAATC
GCGCCATGTATCATATTGCTGAAGACATTTGTTCCAAGGAAAGGGAAATAATGGAGGATA
AGTTCCTTGCAAAATAACAATAATCGAGTAC

Homology of Contig U35_2602 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os01g51380.2	489	protein\|ATP synthase, putative, expressed
Brachypodium v1_2	Bradi2g47980.3	489
Arabidopsis v10	AT4G38510.5	494	ATPase, V1 complex, subunit B protein \| chr4:18011155-18014897 REVERSE LENGTH=494