barSeed - Barley Seed Development Database

Probe CUST_1165_PI390587928

Source Contig U35_21137

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1165_PI390587928	Hv_44K_v2	GGATGAGCTGCATCATGTAGTGTCAGATCAAAACTCAGATATGTTCTTTTTGTTAGTTTA	1182	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_38520.1	2306	2e-24	2240 - 2299	100	60 / 60	plus	ABC15036
JLOC1	JLOC1_25053.1	2361	8e-25	2240 - 2299	100	60 / 60	plus
Harvest21	ABC15035	658	3e-25	566 - 625	100	60 / 60	plus
Harvest35	U35_21137	1276	3e-25	1183 - 1242	100	60 / 60	plus

Contig Sequence (1276 bp)

>U35_21137 1276 Hv_44K_v2
CGACATTGGCTTTATATCATGGTTCTCCACTTGGACGTGGCTTCTGCAAATTTGTGCAGG
ATGCCCGTGTGAGTGTATTAGGATCTGTGCCTAGCTTGGTGAAATCATGGAAGGCTGGTA
ATCTTACTGAAGGGCTAGACTGGACTAAAATCAGGGTACTTGCCACAACAGGGGAGGCTT
CTGATATTGATGATAATCTGTGGCTATCTTCACGTACCTGTTACAAACCCATTGTTGAGT
GCTGTGGGGGCACAGAGCTGGCATCCTCATACATTCAAGGGAGTCTTCTGCAGCCACAAG
CTTTTGGAGCTTTCAGTGGTGCATCAATGTCCACTGGGTTTGTCATACTCGATGAACAGG
GAAATGCATATCCTGATGATCTACCTTGCTCTGGAGAAGTGGGTCTCTGCCCTTTATATT
TTGGTGCTACCAATCGGCTTCTCAATGCTGACCATGATAAGGTTTACTTTGATGGAATGC
CCATTTACAGAGGACGGCAACTCCGACGACATGGAGATATAATCCAGAGGACAGTAGGTG
GTTACTATATTGTACAGGGCAGAGCAGATGACACTATGAATCTTGGAGGGATTAAGACAA
GCTCAGTGGAGATTGAACGGGTTTGTAATGGAGCCGATGAGGGTCTGCTAGAAACAGCAG
CTGTTAGCATCAAACCTTCCGGCGGGGGACCAGAGCAACTGGCTATCTTGGCAGTGCTAA
AAGATAGATCCGCAACATGCGATACAAATCTTCTGAAGAGCAAGTTCCAGAGAGCCATCC
AGAGGAACCTCAACCCCCTTTTCAGGGTGAGCTATGTCAAAGTCGTCCCCGAATTCCCGA
GAACTGCTTCAAACAAGCTGCTGAGAAGGGTCCTGAGGGATCAGCTGAAGCAAGAGCTCG
CGAATCACAGCAAGCTATAAGGGGCCTAAGGGATATCTATCGCTTTTCAACAGGAAAATG
GATCTTCATAATCCAAGTTTATTGAACTCACGGCCGTGTTACATAAGGAACGGTTCGATT
CCCTTTCATTCACTTCATTGGGGGTGTGTAGTTATTTATTGTGTGTGTTGAGCTCATTGG
AAGTAATAAGGCGATGGCTTGCTAAAATTAGATCACTCTGTATGTTTGAAGGTTTATAAG
CCATCATATTTTCTTATGTTTTCTCTCTACATCTTCAAGACAGGATGAGCTGCATCATGT
AGTGTCAGATCAAAACTCAGATATGTTCTTTTTGTTAGTTTATTTAGGTAGCAAACTAAC
GATTTAAAAAATCTGA

Homology of Contig U35_21137 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g59080.1	731	0.0	protein\|AMP-binding enzyme, putative, expressed
Brachypodium v1_2	Bradi1g04830.1	731	0.0
Arabidopsis v10	AT1G55320.1	727	1e-143	\| Symbols: AAE18 \| acyl-activating enzyme 18 \| chr1:20633371-20636659 FORWARD LENGTH=727