barSeed - Barley Seed Development Database

Probe CUST_11646_PI390587928

Source Contig U35_2624

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11646_PI390587928	Hv_44K_v2	CATAAGATGTTCTCACTCGTTACCCCAGATGAAGAATAGCTTCCTCGAGTTCGCAAAAAA	667	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.378	1.507	1.057	0.837	0.412	0.493
Raw	1280.543	2134.951	1356.627	1663.896	290.914	378.343

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_6366.1	2859	6e-24	2771 - 2829	100	59 / 59	plus	ABC06250
JLOC1	JLOC1_4141.2	2691	3e-24	2617 - 2675	100	59 / 59	plus
JLOC1	JLOC1_4141.1	2742	3e-24	2668 - 2726	100	59 / 59	plus
Harvest21	ABC06250	738	3e-25	668 - 727	100	60 / 60	plus	ABC06250
Harvest35	U35_2624	811	3e-25	668 - 727	100	60 / 60	plus

Contig Sequence (811 bp)

>U35_2624 811 Hv_44K_v2
ACCGAGACAGAGAGTGGAGAAGAGCTTGCTGCTGAGGAAAGTGGTAATGCTGGGGTCGGT
AGTGAGGTCAAGGTGTGCGTCAGGGTGCTTGTGAAGAAAGGGCACAAGCAGCAGACAAGG
CAAATGCTCATTCCCGGGGACTGCTCACTTGTTCAGAGCACAAAGCAGCAAGAGGCAGCT
CTGCTTGAGGAGAGGCAAAACATCAAGCAGAAAATCCTTGAATACAACGAGAGGGAGGAG
GAAGAATTCAACGCATCATCATTGCAAGCTGGGTTCTGGGGTCAAGGAGGAAGCAGCGCA
GGTGGCAGTATCATGGGCTCGGGCGGGCATGGTTCGTGGGACGGTTCGAACAGAGGCGGA
CGGGGCGGTCGGCAGCGGTACTACATCGCCGGCGGGATCTACCATGGTTATGGCAGGGGA
AGGTGACCGTCTGCACGAGGGTGGTGCTAAGTAAAATCACGGTTTAATTCAACCGCTGCC
TTGCGAAATGGAAACCCAAGTGACGAACAACATGACGTAATTTTGGAAGTGGCCTGGGTG
CTGTACTCCGCTGGGCTAATAGCCCCCATGTTTACAGTCACGTGTAAAGTGGGTTTGGTC
ACCGGTAACTGGTTTAGGAGGGTATGTTTTTTTTTCTTCTCAACTGGTTTAGGCGGTTTC
TCTTGTACATAAGATGTTCTCACTCGTTACCCCAGATGAAGAATAGCTTCCTCGAGTTCG
CAAAAAAAAAAAAAAAAATCCGCAAACGGTAGAACCTGAGCACGAGGATGGTAGCCCACT
CCATGTCTCCATCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_2624 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None