barSeed - Barley Seed Development Database

Probe CUST_11644_PI390587928

Source Contig U35_2626

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11644_PI390587928	Hv_44K_v2	ATATCCCTTTGTGATCAGACTTTAATACTCGGTTAACTTGGCGGCATTTTCCTCATGTCC	1889	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.465	1.346	1.145	0.830	0.446	0.526
Raw	15212.733	21346.003	16363.900	18210.830	3498.250	4509.923

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57581.1	5318	2e-24	116 - 175	100	60 / 60	minus	ABC06577 ABC48272
JLOC1	JLOC1_37343.2	6342	8e-25	6200 - 6259	100	60 / 60	plus
JLOC1	JLOC1_37343.1	6420	8e-25	6278 - 6337	100	60 / 60	plus
Harvest21	ABC48272	318	6e-22	57 - 116	97	58 / 60	minus	ABC48272
Harvest35	U35_2626	2020	3e-25	1890 - 1949	100	60 / 60	plus

Contig Sequence (2020 bp)

>U35_2626 2020 Hv_44K_v2
GAGAAAAGAGAGTTAAAGCTCGAAGGCGCATGCTGGGTAATATTAGGTTGATTGGAGAAT
TGTACAAAAAGAGGATGTTGACAGAGCGCATCATGCATGAATGCATCAAAAAATTGTTGG
GAAATTATCAGAATCCAGATGAAGAGAACATTGAAGCACTATGCAAATTGATGAGTACAA
TTGGAGAGATGATAGATCATCCAAAGGCTAAGGAACATATGGATGCATATTTTGATAGAA
TGCGCAACCTGTCAACCAGTCAGCTGATATCTTCCCGTGTTAGATTCCTGCTCAGAGATT
CAATTGATCTCAGGAAGAACAAATGGCAGCAAAGGCGTAAAGTGGATGGCCCCAAGAAGA
TCGATGAGGTTCACAGGGATGCAGCTCAGGAAAGACATGCTCAATCAAGTAGGTCTCGTG
GTCCGGTCGTTAGTTCTCTTCCAAGAAGAGGTGCACCCTCTATGGATTACGGCTCCCGTG
GCTCAGCAGGACCATTGGTATCTCCAGGTCCTCAACAACGAGGGCGTGGATTTGGTAATC
AAGATATTCGGTATGAGCAGGAAAGGCATCAGTTCGATAGAACTGTTCCCCTTCCCCAGC
GTTCTGTAAAGGACGAAGCTATCACTCTTGGACCACAAGGTGGCCTAGCTAGGGGTATGT
CTTTAAGAGGGCAGCCACCGGTATCAAATGCTGAACTTCCTAGTGTTGTTGACCAGCGCA
GGATTGTATCTGGTCCTAATGGGTACAATTCTGTGGCTTCAACAACAAGAGAAGACACTA
GCTCAAGAATTCTAGATCGATTTTCTGGGAGAATAGCACCTGCTTCACAATCTGCTAGCT
CTTTACACAGACCTGCCAGCCAGGAGGGTCGTTCAGGAAATAAATCATACTCCGAGGAGG
AATTGAGAGAGAAATCTATTGCAACCATCCGGGAATATTATAGTGCAAAAGATGAAAAGG
AAGTTGCATTGTGTATTGAAGAGTTGAATGCACCGAGCTTCTATCCTTCTCTTGTATCAC
TTTGGGTAAATGATTCCTTTGAGAGGAAAGATTTGGAAAGAGAGTTGTTGGCAAAGCTCT
TTGTTGGGATTTACAACGGTGGATATAATTTATTGAGCAAGCCTCAGCTCATTGAGGGGC
TTTCATCTGTTCTTGCTTCATTGGAAGATGCTCTAAGTGATTCTCCAAGAGCGGCAGAGT
ATCTTGGACGACTTCTTGCAAGGTTTGTGGTGGAGAAGATACTGGTTTTGCAAGACGTAG
GTAGATTGATTGAAGAAGGCGGAGAGGAGCCTGGACACCTTGTGCAGGAAGGCATCGCAG
CTGATGTCCTCGGGGCAGTCTTGGAGTCGATCAAAACAGAAAAAGGGGATTCCTTCTTGA
AGGAGGCCAAGACAAGCTCCAATCTCAAATTGGAGGATTTCAGACCACAGCATCTGAAGA
GGTCAAAGTTGGATGCCTTCATGTTGACATAAGAGTGTGTTTGCTAGCTTATTACCAATT
CATGGGTGTTGTCGCCAAGGATTCGGTCCCATGTCTTTTGCACCCAGCCACCCCACCTTT
TTGATCGAAACAACTGCAAATATACCCATCAGATGCTTGCTTGCTAGGCGACCATTGTAT
TCGAGGAGCCCCTTCCTACTGTGAAGTCAAGAAGAAGATGATGTATTCTGTTCTACTGTT
GAGACTTGTTAGTGGTGGTAAAATTTATTGTTGCGGATGGACACTGGTTGTCGCAGGCAG
CTGGGTGCTATTTCGAGTTGGCTCCCGTGAGTGTTTGTCTGGGAATATTTTTGTGATCAT
GGAGGGGTAGAGGTCAGTTAACCAATATTTGTTGGGACTAAGAGGAACACTAGGGTTAGA
TTTGATGCCTCCCGTGTGGCTTCTGGCTCATATCCCTTTGTGATCAGACTTTAATACTCG
GTTAACTTGGCGGCATTTTCCTCATGTCCTAAAAAAAAAAAAAAAAATATATTCTTGCAA
GTCGCTGCTATTCTTTGTGCTTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_2626 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g36940.2	1793	0.0	protein\|eukaryotic translation initiation factor 4G, putative, expressed
Brachypodium v1_2	Bradi1g25002.1	1867	0.0
Arabidopsis v10	AT3G60240.4	1727	3e-153	\| Symbols: EIF4G, CUM2 \| eukaryotic translation initiation factor 4G \| chr3:22261842-22268295 FORWARD LENGTH=1727