barSeed - Barley Seed Development Database

Probe CUST_11627_PI390587928

Source Contig U35_17408

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11627_PI390587928	Hv_44K_v2	TCTAGAAACTTCACCCGAGTAACTGCCAGATAACAGGTCTGGTCACTGAATGAGAATCCT	1357	GeneList: lightgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.902	0.425	0.207	1.090	2.977	6.171
Raw	78.545	58.227	26.593	206.614	202.822	460.778

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK362171	1353	2e-24	1284 - 1343	100	60 / 60	plus	ABC07565
MLOC	MLOC_32698.4	1302	2e-24	1173 - 1232	100	60 / 60	plus	ABC07565
MLOC	MLOC_32698.3	1224	2e-24	1094 - 1153	100	60 / 60	plus	ABC07565
JLOC1	JLOC1_21279.1	1688	8e-25	1551 - 1610	100	60 / 60	plus
Harvest21	ABC07565	1411	3e-25	1324 - 1383	100	60 / 60	plus	ABC07565
Harvest35	U35_17408	1421	3e-25	1358 - 1417	100	60 / 60	plus

Contig Sequence (1421 bp)

>U35_17408 1421 Hv_44K_v2
GGCATGCTGCAGTACTGTGGTACCAAAGATAGCTATGCAAGTATATGTAGATGTAGGCTG
CTGAGTCATAAAGCTGAAGAGCACATGCTCCGTCCTTGCAAGGTTGGGGCTTACTCGGAA
CAAAAAGGTTTCTTGCAAGCAACTTTTTGATACATATAACCATGAGTTCATAACAAGAAG
GCATTCTCTACCACTCCATTCCATTCCCCACAAGCAGAGGGAGAGAGAGTGAGAGGGGGA
AGGGAAAGGGGGAGCTGAAGGCATGGAGGGCAAGCACACCGATCAGGCAAACGTGAAGGC
AAAGCACTCCAAGGTGATCTGCTGCAAGCTTTACATCTCTGAAAGCCGGAATGCGGCGAT
TGTGGATGCCATCAGCCGCATAGGCCAGAAAAACCCTGAGGTGGTTCTGCTCAGCAAGTT
TGATGACAAGTACTACAACCGTGTCCGCTACACGCTCGTCTCCTACATCACCAGCGAAAG
CTCAGCCGGTGAAGCTGTGTTCGGCCCAATCAGGAAGGTACTGCTGGAGATGATCGAGGC
TGCATTTTCAGCCATAAATCTCCAAGCGCACAGCGGGACTCATCCACGCATTGGTGTCGT
GGATGACATCTCATTCCACCCCTTGAGCCCCGCGGCCACAATGGAGGATGCCGCTCAGCT
GGCTAAGCTGGTGGCCTCTGACATTGGAAATGGCTTGCAAGTTCCAGTGTTCCTCTACGC
GGCAGCACACCCCACCAGCAAGAGCGTCAGTGCAGCACGGCGTGAGCTCGGCTACTACCG
GCCAAACCACAAGGGCGTCCAGTGGGCAGGCCAGGTGCTCCCCCATACTCTACCGGTAAA
GCCGGATGTTGGGCCAGCTCATGTCTCTCGCGAAAGAGGCGCCACCATGGTTGGAGCTAC
ACCTTTCGTGGACAATTACAATGTGCCGATATTCTGCAAGGATGTCCCGACCGTGAGAAG
AATCACCCGGAGGGTGACTGGACGGAGCGGAGGGCTCCCAACGGTACAGGCGCTTGCTCT
CTTCCATGGCGACAATTGCACGGAGATTGCGTGCTTGCTGGATCCAGATCATGTCGGTGC
CGATCAGGTTCAGTGGCTGGTTGAGCAGATTGCAGAAGAGCAAGGGCTTGAGGTTGACAA
GGGCTATTTCACCGACCTGTCCAAGGATATGATGCTGGAACGGTACTTCGAGATGATTTC
TGCAGCTGATTGACATGACCACAATTTTCTTATTGTAATCATGCATGTCTGCACTTCCAT
GTATGCTGCTGTTTAAACTGTGGCACCAACTTGGACCCCGGACCGACCAATTCCAACATT
TTGTATATACTTAGTTATATCTGCACTGAAGATGGTCTCTAGAAACTTCACCCGAGTAAC
TGCCAGATAACAGGTCTGGTCACTGAATGAGAATCCTGTTT

Homology of Contig U35_17408 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g38540.1	319	2e-150	protein\|folic acid binding protein, putative, expressed
Brachypodium v1_2	Bradi1g15507.1	321	0.0
Arabidopsis v10	AT2G20830.2	431	8e-73	transferases;folic acid binding \| chr2:8968370-8970479 REVERSE LENGTH=431