barSeed - Barley Seed Development Database

Probe CUST_11623_PI390587928

Source Contig U35_31702

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11623_PI390587928	Hv_44K_v2	ATGGACCCGAACCTGGGTGATCTATCCATGACCAGGACTTCATGGCGGTGTTCATGCTGG	195	GeneList: darkmagenta MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	5.138	3.687	1.295	0.788	0.562	0.493
Raw	259527.333	245673.333	89380.533	82494.933	21117.800	20706.233

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_31702	483	3e-25	196 - 255	100	60 / 60	plus

Contig Sequence (483 bp)

>U35_31702 483 Hv_44K_v2
TCGAGCACTGTTGGCCTATCTGGATAGAACGTGAAACCGTGCTGAGCTCCCAAGCAGTGG
GAGGGGAAAGTGATCTCTGACCGCGTGCCTGTTGAAGAATGAGCCGGCGACTCATAGGCA
GTGGCTTGGTTAAGGGAACGGAACCCACCGGAGCCGTAGCGAAAGCGAGTCTTAATAGGG
CGATTGTCACTGCTTATGGACCCGAACCTGGGTGATCTATCCATGACCAGGACTTCATGG
CGGTGTTCATGCTGGGGCTGGCCTTCCCGTACCACCACTGGACGACCCCGGGCAACCACA
TCGGGTTCGTGGTGCTGTACGCGCTCACCTTCTTCTTCGCCAACTTCGGGCCAAACTCCA
CCACATTCATCGTGCCGGCGGAGATCTTCCCGGCCAGGCTCCGGTCGACGTGCCACGGCA
TCTCCGCCGCCGCCGGGAAGCTGGGCGCCATCGTGGGGTCGTTCGGGTTCCTGTACCTGG
CGC

Homology of Contig U35_31702 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None