barSeed - Barley Seed Development Database

Probe CUST_11620_PI390587928

Source Contig U35_31704

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11620_PI390587928	Hv_44K_v2	TCTCGTAGCCGCCGCCCTGAGGGGGATCTTTGACCTGTACGACCTCATTGTCAGCCTCCA	267	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK356614	764	7e-23	297 - 356	98	59 / 60	minus	ABC10333
MLOC	AK360060	1042	7e-23	266 - 325	98	59 / 60	plus	ABC10333
MLOC	MLOC_47840.2	475	7e-23	170 - 229	98	59 / 60	plus	ABC10333
MLOC	MLOC_47841.1	780	7e-23	181 - 240	98	59 / 60	plus	ABC10333
MLOC	MLOC_47840.1	604	7e-23	175 - 234	98	59 / 60	plus	ABC10333
JLOC1	JLOC1_30792.1	597	4e-23	164 - 223	98	59 / 60	plus
Harvest35	U35_31704	335	3e-25	268 - 327	100	60 / 60	plus

Contig Sequence (335 bp)

>U35_31704 335 Hv_44K_v2
GCGGTGCGCGGGGTGCCACCAGCACCCGCCCGCCGCCGCCGCCACCACCAAGGCGCGGGA
GAAGCCCAAGGGCGCGCGCAAGCTGCGCGCCGCCGACGTCACGCTCAACCACCGCCTCGT
CTCCTAGCGCGTCGGCGGTGGCACCGAGGACGGCCCGGCCGCCACGGGCGGGTACAACTA
CAGGGGCGCCTCCACGTCCGCTGTGCTCGCCCACCTCGTCGGCGGCAACAACTGGCACGC
CAAGGACAAGGAGGAGGACGACACCGATCTCGTAGCCGCCGCCCTGAGGGGGATCTTTGA
CCTGTACGACCTCATTGTCAGCCTCCAGGCCGTGC

Homology of Contig U35_31704 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None