barSeed - Barley Seed Development Database

Probe CUST_11617_PI390587928

Source Contig U35_17412

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11617_PI390587928	Hv_44K_v2	GTCTTGACACCAAGTTTATCTTGCTATGCTATTTGTTATGAGGGTGATTGATGATCAAAA	1331	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.524	1.357	1.107	0.945	0.370	0.374
Raw	497.987	706.616	491.564	667.409	91.261	100.794

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60074.5	1481	7e-23	1398 - 1458	98	60 / 61	plus	ABC07620
MLOC	MLOC_60074.4	1442	7e-23	1382 - 1442	98	60 / 61	plus	ABC07620
MLOC	MLOC_60074.6	1531	7e-23	1448 - 1508	98	60 / 61	plus	ABC07620
JLOC1	JLOC1_39143.5	1503	4e-23	1421 - 1481	98	60 / 61	plus
JLOC1	JLOC1_39143.4	1450	4e-23	1368 - 1428	98	60 / 61	plus
JLOC1	JLOC1_39143.3	1475	4e-23	1393 - 1453	98	60 / 61	plus
JLOC1	JLOC1_39143.2	1594	4e-23	1512 - 1572	98	60 / 61	plus
JLOC1	JLOC1_39143.1	1517	4e-23	1435 - 1495	98	60 / 61	plus
Harvest21	ABC07620	1404	3e-25	14 - 73	100	60 / 60	minus	ABC07620
Harvest35	U35_17412	1404	3e-25	1332 - 1391	100	60 / 60	plus

Contig Sequence (1404 bp)

>U35_17412 1404 Hv_44K_v2
GCTGCAGGGAGAAGGTGGGAGGCGAATCTCGTGGAATTCTCTCTCCCTGCTCGCCGGAAG
CCACGAAATCGCCAACCCACGAATCTTCCCTCACAACCAGTCCACACCGCCGCGCCAAGT
TCCGATCTTGCCGCCCGAGCTGCACTCCGGCCGTCCCCAGTCCCCCCGTTCGAGCCTCCC
GCCGCGAATTCCGCCGGCTCGTCGACCCTGGCAGCAAATGGAATCAGGTGAAAACAACAT
GGGCTCGAATGATGGACCAAACAGCAAAGCTAGCTTGGCTGCGAGGCAACGCTTACGGTG
GACAGATGAGTTGCATGAACAATTTGTGGAGGCTGTTACTCAACTTGGCGGTCCTGATAG
AGCAACTCCTAAAGGAGTTTTGAGAATTATGGGTACGCCAGGATTAACAATATACCATGT
GAAAAGTCACTTGCAGAAATACAGGCTAGCAAAGTACATTCCCGACTCTTCAGCTGATGG
TAACAAGGCTGATAACAAAGATCCAGGGGATTCATTAGCAGGACTTGATGGATCCTCTGG
AATGCAGATATCTGAAGCCCTGAAGCTGCAGATGGAGGTCCAAAAGCGGTTGCATGAACA
GCTCGAAGTACAAAGGCAGCTGCAGCTGCGAATCGAGGCACAGGGAAAGTACCTTAAGAA
AATCATAGAAGAGCAACAGCGTTTCGGTGGTATAAAGTCTGAAACACCTGGTGCAGGAGC
TACTGTCACAGCGTCGAGCGATCAGTTCCCTGACTCTGAGAGGACAGATCCCTCGACTCC
TGCACCCACATCTGAATCTGCATCTCAGGGTGCAGCTTTCAAAAGAGACAGTGGAAGCCA
GACCGAAGCAATCAAGAGTCCATGTCACGATGAACCGCTGCTAACAGCAGATTCCAACTG
TCATCCCGGTTCTCCTACTCTCAGTCCGAAGCACGAGAGGGCAGCAAAGAGGCAGCGAAG
CAGCGACGCCGAGTTCCCGGAGGCCGAGTTGTCCCTTCCGCAGCATATCTTTGAGTCGAG
CTCGGGGCCGGAGTTCCAGCAATGTTCGGTGCCCTACTTCTCGGGTCATTAGCCTCCCGG
CAACGACATTTTGGCAGCATCTTAGAATGGTGTCATCTAAAGGGGATATGCTGTTGTATG
TTGACATAAATTGTTAGGTGTTTTCAGGTGGTTGTTTACATGATGCATACTTACACATGA
CATCTATATCTCGCATTCTTAGCGCCTTGACTTGTAACCTTATTGGCAGATGAGTTGACA
GTTTGGGTAGGGGGGTTGGTGGCCACTGTTAGCCTGTTTTTACATGCTATGTTTTCTACT
CTTGTTCTTGAGTCTTGACACCAAGTTTATCTTGCTATGCTATTTGTTATGAGGGTGATT
GATGATCAAAAAAAAAAAAAAAAA

Homology of Contig U35_17412 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g12770.1	289	2e-122	protein\|Myb-like DNA-binding domain containing protein, putative, expressed
Brachypodium v1_2	Bradi4g27620.1	282	3e-144
Arabidopsis v10	AT2G01060.1	286	5e-59	myb-like HTH transcriptional regulator family protein \| chr2:73456-74902 REVERSE LENGTH=286