- Probe CUST_11616_PI390587928
- Source Contig U35_31706
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_11616_PI390587928 | Hv_44K_v2 | AACATCACCAAGATCCTGGGCGAGTACCCGGAGTACTCGCAGTTCAACAAGCTGCTCACG | 136 | GeneList: None MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.974 | 0.813 | 0.720 | 0.588 | 1.345 | 1.480 |
| Raw | 3.611 | 2.921 | 3.631 | 3.514 | 3.061 | 5.248 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK248505.1 | 1816 | 2e-24 | 366 - 425 | 100 | 60 / 60 | plus | ABC06939 |
| MLOC | MLOC_60618.1 | 1723 | 2e-24 | 31 - 90 | 100 | 60 / 60 | plus | ABC06939 |
| MLOC | AK357650 | 1377 | 9e-22 | 177 - 231 | 100 | 55 / 55 | plus | ABC06939 |
| JLOC1 | JLOC1_39544.1 | 1748 | 8e-25 | 31 - 90 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC06939 | 1691 | 1e-23 | 193 - 252 | 98 | 59 / 60 | plus | ABC06939 |
| Harvest35 | U35_31706 | 237 | 3e-25 | 137 - 196 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_15884 | 1687 | 3e-25 | 220 - 279 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_15882 | 532 | 3e-25 | 194 - 253 | 100 | 60 / 60 | plus |
Contig Sequence (237 bp)
>U35_31706 237 Hv_44K_v2 ATCAGTGATTTTTCAGTGGTGCTGCCCAGCTCAGTGCTCTCCACCAGTCCGCCCCGCCCC ATCCCGAGCTCCAGGCGCCGACGCACCGAGGACGAGGAGGACGATGGAGGCGCGGCGGCG GGCGGCGGAGGGGTACAACATCACCAAGATCCTGGGCGAGTACCCGGAGTACTCGCAGTT CAACAAGCTGCTCACGCAGACGCGGCTGGCGCAGGACATCAACAAGCGCCGCACCAT
Homology of Contig U35_31706 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |