barSeed - Barley Seed Development Database

Probe CUST_11615_PI390587928

Source Contig U35_17413

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11615_PI390587928	Hv_44K_v2	ACAAAGATCCAGGGGATTCATTAGCAGGACTTGATGGATCCTCTGGAATGCAGATATCTG	562	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365733	4220	2e-24	555 - 614	100	60 / 60	plus	ABC07620 ABC12169 ABC14799 ABC15296
MLOC	MLOC_60074.5	1481	2e-24	561 - 620	100	60 / 60	plus	ABC07620
MLOC	MLOC_60074.7	636	2e-24	521 - 580	100	60 / 60	plus	ABC07620
MLOC	MLOC_60074.4	1442	2e-24	545 - 604	100	60 / 60	plus	ABC07620
MLOC	MLOC_60074.6	1531	2e-24	611 - 670	100	60 / 60	plus	ABC07620
MLOC	MLOC_60074.3	988	2e-24	574 - 633	100	60 / 60	plus	ABC07620
JLOC1	JLOC1_39143.5	1503	8e-25	584 - 643	100	60 / 60	plus
JLOC1	JLOC1_39143.4	1450	8e-25	531 - 590	100	60 / 60	plus
JLOC1	JLOC1_39143.3	1475	8e-25	556 - 615	100	60 / 60	plus
JLOC1	JLOC1_39143.2	1594	8e-25	675 - 734	100	60 / 60	plus
JLOC1	JLOC1_39143.1	1517	8e-25	598 - 657	100	60 / 60	plus
Harvest21	ABC07621	655	3e-25	563 - 622	100	60 / 60	plus
Harvest21	ABC07620	1404	3e-25	851 - 910	100	60 / 60	minus	ABC07620
Harvest21	ABC07619	655	3e-25	514 - 573	100	60 / 60	plus
Harvest35	U35_17413	655	3e-25	563 - 622	100	60 / 60	plus
Harvest35	U35_17412	1404	3e-25	495 - 554	100	60 / 60	plus
Harvest35	U35_17411	656	6e-22	514 - 571	98	57 / 58	plus

Contig Sequence (655 bp)

>U35_17413 655 Hv_44K_v2
GCACAGAGGGAGAGAAGGTGGGAGGCGAATCTCGTGGAATTCTCTCTCCACTGCTCGCCG
GAAGCCACGAAATCGCCAACCCACGAATCTTCCCTCACAACCAGTCCACACCGCCGCGCC
AAGTTCCGATCTTGCCGCCCGAGCTGCACTCCGGCCGTCCCCAGTCCCCCCGTTCGAGCC
TCCCGCCGCGAATTCCGCCGGCTCGTCGACCCTGGCAGATGATGAACAGTATACCCACCA
GCACTAGAGTCTAATCGTAGCAACTCAGTCGCTCACCTGCAGCAAATGGAATCAGGTGAA
AACAACATGGGCTCGAATGATGGACCAAACAGCAAAGCTAGCTTGGCTGCGAGGCAACGC
TTACGGTGGACAGATGAGTTGCATGAACAATTTGTGGAGGCTGTTACTCAACTTGGCGGT
CCTGATAGAGCAACTCCTAAAGGAGTTTTGAGAATTATGGGTACGCCAGGATTAACAATA
TACCATGTGAAAAGTCACTTGCAGAAATACAGGCTAGCAAAGTACATTCCCGACTCTTCA
GCTGATGGTAACAAGGCTGATAACAAAGATCCAGGGGATTCATTAGCAGGACTTGATGGA
TCCTCTGGAATGCAGATATCTGAAGCCCTGAAGCTGCAGATGGAGGTCCAAAAGC

Homology of Contig U35_17413 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g12770.2	255	4e-59	protein\|Myb-like DNA-binding domain containing protein, putative, expressed
Brachypodium v1_2	Bradi4g27620.1	282	3e-66
Arabidopsis v10	None