barSeed - Barley Seed Development Database

Probe CUST_11614_PI390587928

Source Contig U35_31707

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11614_PI390587928	Hv_44K_v2	AAACATGTCAAGAAGCCGGGCAATCTTGCGTCTCCTCCTGGCCCTTTGCATCCTCTCCTG	12	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK359393	1735	2e-24	41 - 100	100	60 / 60	plus	None
MLOC	MLOC_18299.1	387	2e-24	286 - 345	100	60 / 60	minus	None
JLOC1	JLOC1_12660.1	328	8e-25	233 - 292	100	60 / 60	minus
Harvest35	U35_31707	331	3e-25	13 - 72	100	60 / 60	plus

Contig Sequence (331 bp)

>U35_31707 331 Hv_44K_v2
GCTAGCAGCATCAAACATGTCAAGAAGCCGGGCAATCTTGCGTCTCCTCCTGGCCCTTTG
CATCCTCTCCTGCAACACATCCATTTCCTCCTCCGCGTCCACCGCCGATGCATTCCTCCA
CTGCCTCGCCGCCGCCATCCCGCCCCATCTCCTCCACACCCCGCCCTCCCCGTCCTACTC
CCCGCTCCTGCTCTCCTCCGCCAGGAACCTCCGCTTCGTCACGCCCGGCACCCCACGGCC
TCTCGCGATCGTCGCCGCCGGGGAGGCCTTCCACGCCCAGGCCGCCGTGCGCTGCGGCCG
TCTTGCAGGGCGTCCGTGTCCGCGTGCGCAG

Homology of Contig U35_31707 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None