barSeed - Barley Seed Development Database

Probe CUST_11604_PI390587928

Source Contig U35_31713

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11604_PI390587928	Hv_44K_v2	TTTGAAGGGGTCGCTAAGAGAATAGCCGCTGCTGGATATGCAGGATATGCTATGGATTAT	439	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_56950.8	1452	7e-23	899 - 958	98	59 / 60	minus	ABC17954
MLOC	MLOC_56950.6	1338	7e-23	956 - 1015	98	59 / 60	minus	ABC17954
MLOC	MLOC_56950.4	1577	7e-23	1020 - 1079	98	59 / 60	minus	ABC17954
MLOC	MLOC_56950.5	2265	7e-23	1708 - 1767	98	59 / 60	minus	ABC17954
MLOC	MLOC_56950.1	1310	7e-23	1100 - 1159	98	59 / 60	minus	ABC17954
MLOC	MLOC_56950.9	686	7e-23	476 - 535	98	59 / 60	minus	ABC17954
MLOC	MLOC_56950.7	1925	7e-23	1526 - 1585	98	59 / 60	minus	ABC17954
MLOC	MLOC_56950.3	1698	7e-23	1025 - 1084	98	59 / 60	minus	ABC17954
MLOC	MLOC_56950.2	2156	7e-23	1621 - 1680	98	59 / 60	minus	ABC17954
JLOC1	JLOC1_36860.5	1727	4e-23	600 - 659	98	59 / 60	plus
JLOC1	JLOC1_36860.4	1734	4e-23	600 - 659	98	59 / 60	plus
JLOC1	JLOC1_36860.1	1488	4e-23	354 - 413	98	59 / 60	plus
Harvest21	ABC19236	598	1e-23	496 - 555	98	59 / 60	plus
Harvest35	U35_31713	502	3e-25	440 - 499	100	60 / 60	plus
Harvest35	U35_9789	598	1e-23	496 - 555	98	59 / 60	plus

Contig Sequence (502 bp)

>U35_31713 502 Hv_44K_v2
CAAATGGCTCGCGGCTTCGTCCCTGCCTCCCTTCCTTCCTTGCTGGAGACACGGCTTTTG
TCTCTCCCCCCCCCCGACGCGCCATGCCGGGGCGCCGCGGGCGGGGACTGTGAGGCGCGC
GTCGGTCGCGGTCGCCGCAGGGAAGGCGCCGTTGCCGAGGCTGGAGGGCGCCAGCGAGGA
GCTGAGGGCCGCGGCGGCGCAGAGCCTCGACTGGGCGCCGGCGCGCCGGCGCGTGAGCGC
GGCCTTCGCGCCCGTGCTCCCCACGCTCGACCACTGGCTGTTCAAGATGGCGCCCAAGGG
AATCCAGATGGAAGAGAATTTTGAGACCAACTCACAGGGAGTTGAAATATTCTGGAAGAG
TTGGCTGCCTAGGGAGGGCACTCCCACCAAGGCAGCGCTTTTCTTCTGCCATGGGTATGG
AGATACCTGCACTTTCTTTTTTGAAGGGGTCGCTAAGAGAATAGCCGCTGCTGGATATGC
AGGATATGCTATGGATTATCCT

Homology of Contig U35_31713 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g49380.2	248	2e-71	protein\|lipase, putative, expressed
Brachypodium v1_2	Bradi2g46910.1	378	6e-75
Arabidopsis v10	None