barSeed - Barley Seed Development Database

Probe CUST_115_PI390587928

Source Contig U35_4812

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_115_PI390587928	Hv_44K_v2	AAGCGTGATTTGGAAGCTTGCGTATTTCCTGCAGTTTTGGACTTTTGGTCCGTCCTTTTG	674	GeneList: darkred MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.901	1.540	1.746	1.272	0.585	0.495
Raw	1759.868	4712.623	4579.217	5186.593	858.111	782.651

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction
JLOC1	JLOC1_15911.1	1063	8e-25	853 - 912	100	60 / 60	plus
Harvest21	ABC02844	449	3e-25	389 - 448	100	60 / 60	plus
Harvest35	U35_4812	735	3e-25	675 - 734	100	60 / 60	plus

Contig Sequence (735 bp)

>U35_4812 735 Hv_44K_v2
GCTCGGCCTCCACCGATCTCCAAAAAAATGGCCGTCACGCTCACGCCCGACCTCCCCCTC
CTCCTCCTCCTCCTCGGGACGCTCCTCCTCCTCGCGGCAGCGCCGGCCCCCTCCGCCGCG
GAGAAGTTCGTCGTCGGCGACAAGAAGAACTGGGCCCCCAACGTCAACTACACCACCTGG
CCCGACCAGTACCGCTTCCACGTCGGCGACTGGCTCCAGTTCAACTACGCCAGGGGGGGC
ATGTACGACGTGGTGCAGGTGGCCAACGAGGCGGCGTACGAGAAGTGCGACCCGACCAAC
CCCGTCGTCAGCTACGACCGCGGCCGCGGCTACGTCTTCCAGCTCAACCACACGGGCCGC
TACTACTTCATCTGCAGCCGCGGCTACTGCTGGGGCGGCATGAAGGTCACCGTGCTCGTC
GAGGACCGCCCTGCGCGCCCGCCCTACGCCGCGGCGCCGGCGCCCAACGCGGCCGCGCAC
CACGCCGGCGTCGCCTCGTGGGCCCTCGCCGCCGCCGCGGCCTCGCTCTGCGCGGCGGTT
CTGGGTTTGCCGTTTGCGGTGTGAGCGGAGGGAAGGGACCAATGGGTCTTTTCGAGTATG
GACGGGCCGTCCAGCCTTTTATTAGCGCCACTCTGTGTCTGTGGCCATGTATGGAAGGTA
CTTACTGGTTAAGAAAGCGTGATTTGGAAGCTTGCGTATTTCCTGCAGTTTTGGACTTTT
GGTCCGTCCTTTTGG

Homology of Contig U35_4812 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi2g50790.1	173	4e-51
Arabidopsis v10	None