barSeed - Barley Seed Development Database

Probe CUST_11598_PI390587928

Source Contig U35_17423

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11598_PI390587928	Hv_44K_v2	CATTCATGCAACGCTATTCCTTGATCATAGGTATTTCTTCAGACGATCGTTCCGGACTGT	1068	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_68799.1	779	7e-23	108 - 167	98	59 / 60	minus	ABC02089
Harvest35	U35_17423	1206	3e-25	1069 - 1128	100	60 / 60	plus

Contig Sequence (1206 bp)

>U35_17423 1206 Hv_44K_v2
CTCTACACATTGTGAATTGTGACCGAGACGAGATTCTCTTCCTCCCGTCGCCGTCGCTGC
CGCCGCCGCCGCCGCCGTCGCCGTCTTTTGTCACCGCGATGCCTCGGTATTATTGCGATT
ACTGCGACACTTATCTGACCCATGACTCGCCATCTGTCCGTAAGCAACACAATGCTGGAT
ATAAACACAAGGCAAATGTTCGTAACTACTATCAGCAATTCGAGGAGCAGCAAACTCAAA
GTTTGATTGATCAAAGGATCAAGGAACACCTAGGACAAGCCGCAGCGTTCCAAGTTGGCG
CTCCTTTCAACCAACATCTTCTTCAATATCCAGGAAATATGTCCCGTCCCCGTCTTCCAA
TTCTGCCCACACCCATGATGCAACATGGTTATCCTCAACATCAACAACCTGGTGGGCCGT
TTGCAAGGCCTCCTATTTTACCAGTTCCTGGCGCTCCAGGTTATCCTGGTGCTCCAACCA
TGCCACTGCCCGGGGCCCCTCCTGGTTCAATGCCTATGCAGGTGGCACCTCTCCCAAGGC
CTCAGACACTACCACCTCCAACATCTGGGGCCCCAGGTGCACCCATGTCCAACAACGCAT
CACCTCCAGGCCCTCCACCGATGTATCAACCACCAACTGCAGGCTCAACTTCTGTCGCTC
CGCCCCTGGCCCCAGCGCCCCCTCCACAGGCTGCATTCTCCTATGCACAATCGAACGAAG
GCAACCACTGATCTGTTCCTTGGCGTTTATTGTATGAAATTTGAAGAACAACCATAACTT
GGAAGTTGATGCTTCTTGCCTGTCTGTCTTTTGAATTTTAGAGGGCGGTCTGTCTGTTGA
AATTTGGAGAATTGTTAAGAACGGCTTCCTGCAGCTGTATTTCTTGTATTTTAGGTGGTG
TAACCTTTTACTTCTTAATCCATCAAGTTCGTATTAGTTTCTTGCCTTTTTTTTTTTTCT
GAGGGTAGACGTACCATAGCTTTATACTAGAAGGCATATTATATGTACAAGATGTTACAG
CTATTGTTAGTTAGAAATCACGAGTCGATTTTAACCCAGCCCCCACTCCATTCATGCAAC
GCTATTCCTTGATCATAGGTATTTCTTCAGACGATCGTTCCGGACTGTTGCCCCGCCAAA
CACTCTACCATTCCTTTGCTTTCACAAACTCTACCAGATTAGCATGCCCAAAAAAAAAAA
AAAAAA

Homology of Contig U35_17423 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g16640.1	229	2e-65	protein\|proline-rich protein HaeIII subfamily 1 precursor, putative, expressed
Brachypodium v1_2	Bradi3g09870.1	212	2e-76
Arabidopsis v10	None