barSeed - Barley Seed Development Database

Probe CUST_11596_PI390587928

Source Contig U35_17424

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11596_PI390587928	Hv_44K_v2	GGTTGTCATTGCATTTCATGTAGAAAATACAATAAACGAATAGAGGTAGCCTTGGTATGT	1679	GeneList: turquoise MasterList: Hydrolysis_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.564	1.584	1.172	0.697	0.195	0.141
Raw	2930.233	4640.053	2988.050	2723.313	277.732	218.376

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_20723.1	1909	2e-24	1788 - 1847	100	60 / 60	plus	ABC06967
JLOC1	JLOC1_14366.1	2291	8e-25	1861 - 1920	100	60 / 60	plus
Harvest21	ABC06967	1756	3e-25	1680 - 1739	100	60 / 60	plus	ABC06967
Harvest35	U35_17424	1756	3e-25	1680 - 1739	100	60 / 60	plus

Contig Sequence (1756 bp)

>U35_17424 1756 Hv_44K_v2
ACTCCACGCTCGCGAGCCGCTCCTCCTCCTCCTCCTGATGCTGCTCGCCGCCGGCGCGGC
GGGGGCAGAGTCGGCGACCCCTTCGCTTCCCATCGGCGTCAACTACGGCGCAAACGCCGA
CAACCTCCCCTCCCCGACCTCCGTCGCCACCTTCCTCGCCACCAAGACCACCATCAACCG
CGTCAAGCTCTTCGATGCCAACCCGGTCTTCATCTCCGTCTTTGCCGGCACGCCCATCTC
CCTCGTCGTCTCCCTCCCCAACTCCGCCCTCCCCGCCCTCGCCGACAAGGCCACCGGCCT
CGACGCCGCGCGGTCCTGGATCCGCGCGAACCTTTCCCCCTACGTCCCCGCCACCAACGT
CACCCTCCTCCTCGCCGGCAACGAGATCCTCCTCTCCACCGACACCAACCTCATCCTCTC
CCTCCTCCCCGCCATGCGCCGCCTTGCGCAGGCCCTCAAGGCCGAGGGCCTCACCGGCGT
CCGCGTCACCACCCCGCACTACCTCGGCATCCTCGCCCCCTCGGACGGCATCCCCTCCAA
CGCCACATTCCGGGCGGGTTACAACACCAAGCTGTTCCCGGCCTTGCTCCAGTTCCACCG
CGACACCGGGTCGCCCTTCATGGTGAACCCTTACCCCTACTTCAGCTACCGGCCGGAGAC
GCTCAACTACGCGCTCTTCCGCCCCAACAGCGGCATCTACGACCCCGCAACGAAGCTCAA
CTACACCAGCATGTTCGATGCCCAGATGGACGCAATCTACACCGCCATGAAGAAGCTCGG
CTACGGAGACGTCGACATCGCCGTCGGGGAGGCCGGATGGCCCACCCAGGCCGAGCCCGG
GCAGATTGGCGTCGGGGTGCAGGAGGCGAGGGACTTCAACGAGGGCATGATTCGGGTGTG
CAGCAGCGGTAAGGGCACGCCGCTCATGCCCAACAGGACATTCGAGACCTACCTCTTCTC
CCTCTTCGACGAGAACCAAAAACCTGGGCCAATCGCCGAAAGGCACTTTGGCCTCTTCAA
CCCGGACTTCACGCCCGTCTACGACCTCGGACTCCTCCGGGACGGCTCGTCTCTTGCTCC
AACCCCTTCACCCAATCCGAGCCCTAAGCCCTCGCCGTCGGGAGGCGGGAAGTGGTGCGT
TGCCAAGGACGGCGCCAACGGGACGGACCTGCAGAACAACATCAACTACGCCTGCGGCTT
CGTAGACTGCAAGGCGATACAGAGCGGCGGCGCCTGCTTCAGCCCCAACAGCTTGCAGTC
TCATGCGTCGTACGTGATGAACGCCTACTACCAGGCCAACGGCCACACCGACTCGGCGTG
CGACTTCAAGGGCACCGGCGTCGTCACGTCCAGCGACCCCAGTTACGGGGGTTGCAAGTA
CGTCTCCTGACGGTACGCAGCAAGCTACGGCAGTACGAGGGCGGGGGCGCCAGCCTTCAG
CCCACTACCATCTCCATCTCGGAGCCGCGGTGGCGGCAGCGACGGAGGACTGCTGATACT
GCCGGGCTTGCGCCATGTTCTTCTATACTCGTGTCTGACAGCCATGCTTCTTCTTCCTTT
CTAGTCATAAATATAAATATCAATCATCGCCTCTTAGCTTAGCGCAGACAGGCGGCTGTA
GCGTGATGTTGGGCCGTATTGCATTGAACCGCATTAATTTATTTTTCGTTCTCTTCTGTG
GTTGTCATTGCATTTCATGTAGAAAATACAATAAACGAATAGAGGTAGCCTTGGTATGTA
AAAAAAAAAAAAAAAA

Homology of Contig U35_17424 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g47820.1	473	0.0	protein\|glucan endo-1,3-beta-glucosidase precursor, putative, expressed
Brachypodium v1_2	Bradi4g09230.1	475	0.0
Arabidopsis v10	AT3G55430.1	449	1e-144	O-Glycosyl hydrolases family 17 protein \| chr3:20549806-20552004 REVERSE LENGTH=449