barSeed - Barley Seed Development Database

Probe CUST_11594_PI390587928

Source Contig U35_17425

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11594_PI390587928	Hv_44K_v2	ATGAAAGGGGAAAACACTTACATAGCTGCACACTACGTTCCTTTTCAAATTTAAGTTCAT	727	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_20994.4	1928	2e-24	1774 - 1833	100	60 / 60	plus	ABC09079
MLOC	MLOC_20994.1	3355	2e-24	2533 - 2592	100	60 / 60	plus	ABC09079
MLOC	MLOC_20994.5	2577	2e-24	1771 - 1830	100	60 / 60	plus	ABC09079
JLOC1	JLOC1_14560.3	1859	8e-25	1778 - 1837	100	60 / 60	plus
JLOC1	JLOC1_14560.2	1855	8e-25	1774 - 1833	100	60 / 60	plus
Harvest35	U35_17425	826	3e-25	728 - 787	100	60 / 60	plus

Contig Sequence (826 bp)

>U35_17425 826 Hv_44K_v2
GCCTCTTCCATGTGAAGACACCATCGAAGGAGGAGCCTATTCCCATCATGAAATACAGCT
TCCTGCCCAAGCACTCGCCTCTCCCCCTGAGGATGCGCCTTGTAAAGCGCCACAGTGGTA
CCTTGCTCTCACTGATGATACACTACGCGTCGAACCCAATGTTGCCGCAGCCACTGAGCA
ATGTTACATTCATTGTTAAGCTTCCTGTGGATCCAACTCTGCTTAATGTTTCTCCCAAGG
CCGTGTTGAACCGGGCAGAGAGGGAGCTCAGGTGGCACATCTCAGACATTCCTCTGAAAG
GTCCCGCTGGACGGTTGAGAGCACGGATGCCCGTAGACCAGGACTCCAAAGATGGTGAAC
TGGAGGTTGTTGGAATGGTCAAGTTTGCTTACCAAGGGCCATTCACATTGTCTGGCATCA
AGCTCTGCCCAGCCATCAATAGCACTGCCCAGTTTAATGAAGTTGGCCACACCTTCTCCA
GCGGGAGCTACCGTTGCATCTGAGTTGGTTACTCTTCTCATTCCCTACACAGGTTGTCCC
AAGGATAGCGCATATCAGCAAGACATTAGACATTAGACATTGCCATCTGTCCTGGGAAAA
GATCATGTGAAGTACACACTCTATTGACTTACTTTCTGCATGACTTGAAAGTTTCACTTT
TTGGTCTGTATGAATTTGACAACTCCCCTTTCTTTGGAATGTGGTTTTGCCCCTGGATTC
AGAAAACATGAAAGGGGAAAACACTTACATAGCTGCACACTACGTTCCTTTTCAAATTTA
AGTTCATTAATTCTGTACTGTATATCAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_17425 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g14620.1	642	3e-104	protein\|expressed protein
Brachypodium v1_2	Bradi3g18920.1	634	6e-109
Arabidopsis v10	AT5G57460.1	646	1e-61	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 166 Blast hits to 166 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 112; Fungi - 4; Plants - 36; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). \| chr5:23275321-23277261 FORWARD LENGTH=646