barSeed - Barley Seed Development Database

Probe CUST_11592_PI390587928

Source Contig U35_17426

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11592_PI390587928	Hv_44K_v2	GAACTTAAATCATGTTTTCGAGTTGTGATTATTCATCAAGGGCACACAATCTTTTGCAAG	1274	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.064	1.190	1.368	0.978	0.386	0.322
Raw	879.244	1564.753	1554.447	1711.645	243.987	219.731

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_20994.2	1761	2e-24	1556 - 1615	100	60 / 60	plus	ABC09079
MLOC	MLOC_20994.1	3355	2e-24	1673 - 1732	100	60 / 60	plus	ABC09079
JLOC1	JLOC1_14560.1	2017	8e-25	1669 - 1728	100	60 / 60	plus
Harvest21	ABC09079	1341	3e-25	1275 - 1334	100	60 / 60	plus	ABC09079
Harvest35	U35_17426	1341	3e-25	1275 - 1334	100	60 / 60	plus

Contig Sequence (1341 bp)

>U35_17426 1341 Hv_44K_v2
TGAGAAGGACCCCTTTGCGGCCAGCGACATGGTCGTTAGCAAGCCGGAGGAAGAATTGGT
CGGTGCGTTCAAGAAGAACAAGGAGACCGCCCTTGTGGTTGCTGATCCTGCTGCTGCACT
TGCTGGGTTGGAGGTCACCTCTTTGCCGCCAGCCGAGGCCACCAAACCAACATTCATTGG
GGTTGAGGGATTTGAGGGCGACTACGGTGGAATCGAGTTTGGTAACGAGGAAGCTTCACT
GGCTGAGGCATTTGAGGGCTTCAATGCGCCGTTTGGTGGTGGTCTAGATGCTTCAGAGTT
TGTTACCACAACCAAGAAGGATCACAAGGACAAGACCCTCACTGGTCTTGAGCTGCTAGC
CATGAGTGGCGGACAGGCACCTAATGCAGCTTCTTCTGGTTCACAGCTCGACAGCTTATT
GGTAACTCCGAGCAAAGACATGACCGTGCCTGAGTTGTGCATCGTGGAGGAGATCAATGC
AGAATTCAAGGAGTCTGTTCTTGCACGGGTTGGTCTGAAGGGTACAATCATTTTGCGGAC
GTTACCACCAAAGAAGGCAGCAGGGAGGGAGACAGAGTTCTCGTTCCGGCTTGAGGGTAC
TTCTGGGATGAAGAGGGCCGCCTTGCAGAGTACTGTGTTGAGTAGCCTCGAGAATGGCCT
CTTCCATGTGAAGACACCATCGAAGGAGGAGCCTATTCCCATCATGAAATACAGCTTCCT
GCCCAAGCACTCGCCTCTCCCCCTGAGGATGCGCCTTGTAAAGCGCCACAGTGGTACCTT
GCTCTCACTGATGATACACTACGCGTCGAACCCAATGTTGCCGCAGCCACTGAGCAATGT
TACATTCATTGTTAAGCTTCCTGTGGATCCAACTCTGCTTAATGTTTCTCCCAAGGCCGT
GTTGAACCGGGCAGAGAGGGAGCTCAGGTGGCACATCTCAGACATTCCTCTGAAAGGTCC
CGCTGGACGGTTGAGAGCACGGATGCCCGTAGACCAGGACTCCAAAGATGGTGAACTGGA
GGTTGTTGGAATGGTCAAGTTTGCTTACCAAGGGCCATTCACATTGTCTGGCATCAAGCT
CTGCCCAGCCATCAATAGCACTGCCCAGTTTAATGAAGTTGGCCACACCTTCTCCAGCGG
GAGCTACCGTTGCATCTGAGTTGGTAACTTGGTACCTTCTTTGTATTGTAGCTGTTACTT
TACCCTTTTTTTCAGCTTGCTTTAAACAACAGGGTGTGAAATTCATATTTGTACGTATTC
GTTTCGTGAGGCTGGAACTTAAATCATGTTTTCGAGTTGTGATTATTCATCAAGGGCACA
CAATCTTTTGCAAGTTTCGTA

Homology of Contig U35_17426 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g14620.1	642	0.0	protein\|expressed protein
Brachypodium v1_2	Bradi3g18920.1	634	0.0
Arabidopsis v10	AT5G57460.1	646	2e-125	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 166 Blast hits to 166 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 112; Fungi - 4; Plants - 36; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). \| chr5:23275321-23277261 FORWARD LENGTH=646