- Probe CUST_11583_PI390587928
- Source Contig U35_29405
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_11583_PI390587928 | Hv_44K_v2 | TGGTCGATCAAAACGGCGCTGGATGCCATCGGGGTGACCAAGTTTGGGCTGGTTGGGGTC | 423 | GeneList: darkturquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.622 | 0.658 | 2.096 | 2.662 | 0.960 | 1.886 |
| Raw | 3.609 | 6.406 | 23.050 | 45.251 | 5.118 | 12.861 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK375029 | 1311 | 2e-24 | 439 - 498 | 100 | 60 / 60 | plus | ABC16937 |
| MLOC | MLOC_38514.1 | 761 | 2e-24 | 447 - 506 | 100 | 60 / 60 | plus | ABC16937 |
| MLOC | MLOC_38514.2 | 1358 | 2e-24 | 530 - 589 | 100 | 60 / 60 | plus | ABC16937 |
| JLOC1 | JLOC1_25050.1 | 811 | 8e-25 | 447 - 506 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC28676 | 483 | 3e-25 | 424 - 483 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_29405 | 483 | 3e-25 | 424 - 483 | 100 | 60 / 60 | plus |
Contig Sequence (483 bp)
>U35_29405 483 Hv_44K_v2 CCCGGATCCTCCACCCTTTGTCGGCGATCGCCGGATACCCCCGCGCCGGTGATCTCCGGC GGTCGCCAGCAATGCCTCCCCCACCGCCGTCCGTCGCCGGCAAGGCCCGGTGCTTCTTCA GCTTCGCGGCGATGCGGGACCGCTGCTTCAGCCGCCGCTTCCTCGCCGCCGGCCTCCGCT TGGTCTCCATCCAGCTCCCCGACTCGGCGGACCCCGTCACCACCGTCCACATGTGGGTCC CCGCCAGGCCGCCACGCAACCCCCTGCTCCTCCTCCACGGCTTCGGCGCGTCCGCCACGT GGCAGTGGTACCCCTACCTCCGCCCCCTCATCGCCGCCGGCTTCGACCCCATCGTCCCCG ACCTCGTCTTCTTCGGCAACTCCAGCACCCGCCTCCCCGATCGCTCCGACACGTTCCAGG GCGTGGTCGATCAAAACGGCGCTGGATGCCATCGGGGTGACCAAGTTTGGGCTGGTTGGG GTC
Homology of Contig U35_29405 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |