barSeed - Barley Seed Development Database

Probe CUST_1157_PI390587928

Source Contig U35_21141

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1157_PI390587928	Hv_44K_v2	GGACGCTGCATGCTGCCTCTGCCTGTGTATTTGTTAAATTTGTTCATATTTATAAAATAT	750	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.951	3.109	1.325	0.648	0.517	0.824
Raw	151.655	382.786	135.828	96.300	28.844	52.069

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK372172	1584	2e-24	1509 - 1568	100	60 / 60	plus	ABC19196
MLOC	MLOC_44180.2	1319	2e-24	1199 - 1258	100	60 / 60	plus	ABC19196
MLOC	MLOC_44181.1	519	2e-24	445 - 504	100	60 / 60	plus	ABC19196
JLOC1	JLOC1_28607.2	721	8e-25	577 - 636	100	60 / 60	plus
JLOC1	JLOC1_28607.1	883	8e-25	739 - 798	100	60 / 60	plus
Harvest21	ABC19196	524	3e-25	37 - 96	100	60 / 60	minus	ABC19196
Harvest21	ABC44351	129	6e-22	37 - 96	97	58 / 60	minus
Harvest35	U35_21141	846	3e-25	751 - 810	100	60 / 60	plus

Contig Sequence (846 bp)

>U35_21141 846 Hv_44K_v2
CACTGCCCCCGCCGCGGCTCCTCCCACTCCGGCACCCAAGCCCAAGGCCAAGGCCCCTGC
CGCAGCACCGCCCGCCAAGGCAACCGCGCCTGCCCCCGCAGCGCTCCCTCCCACCGTCGA
GGCGCCCGCGGCCGCCGCGCCAACTCTCTTCCCCGACGTGCCTGCGGCCGCACCAACTCT
CTTCCCTGACGTGCCTTCCGCCGCGCCGGCCCCGTTGACCAAGCCCACCGACGCCCCCGC
GCCGGCGCCATCAAAGAAGAAGCGCTCGTCCAAGGACAAGAAGAAGACCAAGGCGCCCGC
GCCCGCCCCGGTCGCTGCGGCCCCCGTCAAAGCCAAGGCCGTGGCGCCCACCACCGCCGT
AGCCGCCGCGGCTCCCGGGCCCAGCGGCGACTCCACCGCCGCCGACACCGCGGGCGCCCC
GGGGAGGAGCACCGGGATGACCACGGCCGTGATCGTGGCGGCGATCGGCGCGGCGGCGAT
GCTCGCCTAGAAGATCAACGTCGGGCCGTGCAGTCGGACTCGACTGATGATGCGCCGGCC
ATGCCACTTTTCTTCACTTTATTCGTTTTGTGTAATTATTTATTTGCCAGGGATGGATCG
ATGGGCGTTGGGTCTTTTTCTTTCCTGTGTGGAATGCAGTAGAGCTCACATTGTCGGGAT
TCTTTTGCTTTGCTTCGTGTTGAGACTTGAGAGAGAGAGGTCAGAGTGTCACGGATGATA
CGTACGAGAGACAGATGAGAGGGAGAGGGGGGACGCTGCATGCTGCCTCTGCCTGTGTAT
TTGTTAAATTTGTTCATATTTATAAAATATTTATGTCACTGTTACCATTAAAAAAAAAAA
AAAAAA

Homology of Contig U35_21141 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None