barSeed - Barley Seed Development Database

Probe CUST_11565_PI390587928

Source Contig U35_17435

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11565_PI390587928	Hv_44K_v2	TGGCAGTCATTTCTAACTTGTTGGTGGAGCATCTTATTTCTGGATTATATGCCAATTTAC	2327	GeneList: sienna3 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.333	2.101	0.719	0.694	1.211	0.951
Raw	34.437	33.415	10.165	12.572	8.889	8.096

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC07247	2416	3e-25	2328 - 2387	100	60 / 60	plus	ABC07247
Harvest35	U35_17435	2416	3e-25	2328 - 2387	100	60 / 60	plus

Contig Sequence (2416 bp)

>U35_17435 2416 Hv_44K_v2
GGAATTCGGACGAGGTACCTTTGCCTTCCCCCAAACAAAAATGATCGGCGGCGGTTGGCG
GCGGGGAGAAGAAAGGGCGACGGACGGTCAGTCGGCGACCGCAGGGCATTGGAAGAGAAG
GAGTGGCCAGTCCGTGTTAAGCGAGGAGCTCTATCAGAGTGCAATCTACATGGCTGCACT
CTCCATTCAGGAGAGTATCCTCTGGATCCAGGCCCAGGAGAATAAGATGGTTGAGATTGG
ACGTCGCGGGGGCTCCGCGGATCACAAGAATCTGTTGGAGTTGAAATCCGGTATGTCTGA
GTTGTTGCAGAAGCTCTTACGTCTGGCCGAATCCGAGACCCAGAGGAAGGTCCGCGCGCA
GCAGAACGCCTGTTGGCTCGGCAACAAAGGGAAGGCTGAGAAGAGGATCCGATCGATGAA
ATCGATGGATAGCCAGAGCAAGATTGCCGAGGACGCTAAGACAGAATGGGCAGGGAAGTC
GTCCAAGAGGACCAGCAACGAGAGCAGATCCGTGAATAAGCAGAGCAAGATTTGCAAATC
GATCTCCAATCGGTTCAGTGAGCAGGAGCTGCAGGCAGTTAAGGAGCTGTTCAAGGAGCT
GCCGGACAATATATCCATGTCCATAGCTGCATCTGTCAAAAACTTTATTGAGGCGCAGGG
GGAGGGGACCTTGATGGAGGAGAGGGCGGTTGACTTCAAATTAGGTTTGCTCTCCCGGCA
GTTCCATGGCCTGTGGGACTCCATGCCTCAGCTATCCTCGACAGAATTGAAATTTCTAGC
AATTTGCATGTTTACTTGTGACGAGTCCTTTGTACGCTGCTGCTCCACGTTGAAGTCCAT
CTCTGCAGTCATTGACAGGCTTTGTGCATGGGTGCCAGAATTGGTAGTGGTAATGAGACA
AGTTAAGAAAGATGAAGCTATCCTCATAAGGGATGTGGATGTGGCAATGAGACAGAATAA
GGAAGATGAAGATGTCCTCACAAGGGATGGGGATGTGGTAATGAGGCAGAATAAGGAAGA
TGAAGTTGTCCTTGCAAGGGATGATGATGATGAGGATAAGGAAGTGGTGGATGAGGAGGA
GGATGTCGATGTGCGTGAGTACGAGGTGGAGAAGAGGGCTGAGGAATACCATTTCGCTGC
TTATCGTACACGCTGGGAATGTAGACATGGCAATGGTTGCAACTTTGAAGACCCAACTTT
ATTCAGCCCAATGCAGTTCACCCACTACATGCCAGGCAATGCCGGCCGAACCTTGATGGA
TGCTAAATTCTTAAGGACGATGCAGATCTACTCCATTAAAGTCACAGAAACAAAAGGGAT
CCCCCTCGAGTGGCCACTGAATGTATATGGTGTAGTTGCTGCCCGAGATGTTGTGGACCA
TCGCCGCAACCATCTCTTCCTTCGCACTAGGGATGATTGCCAAATCCTTACGGAAGAGAA
TCCTTTTTTGCACTTGACTGGCCCTTCTCGTGCAATTATGTCTGATGACACTGTTATGAT
TGAAGTCCAACTACAACTAAAGGGCACAGTGCAGTCTGAAGATGCAGTATTGATCGGTAA
AGCCTTCACTTACGATGATGATAATCATGGTGATAGTCACCTCCAGGGCCTTTGCACAAT
AGTGCTAAGCTGTGAGAATCTTGAACAATCGGTCCAAGCCACAATCCTCAGTGTCTGCGC
TGTCCAGGGCTTGTTGCCTTGGGGAAATGGCATTGTTTGCTCAGCACTATCTAAAGACAA
AACTAAAGCTAGTGTTCCGTGCTCGCCTAAGCATGTTTTGCTGCTTGATTCACAAGCTGG
AACAATGCCGGTGGATGGAGAGGGTTACCTCCAGCTGTCCAGAAATGTGGTGTCTGTTAA
ATCCACAGGAGAGCTGTCAGTTTTCATAAAGGCTGGAGAACACATTGGAAGTGTTGACTT
CACACCCCAATCCAGCAACGTAAGTCAAGGACGTTGTAAGCTTGGTAACTGTGAAGTGGA
GATCACTGTAGCTTGGTCCCTCCTTGTTGAAAGCCAGCATCTTATCAAGCCGAGGGGATC
TATAGAGCCTTATGGAAACAAATTAAGTACATGTATGCCTTGCATGAAACTTGTTAAAGA
CGCTTGTTGAAGATGGGTTAGAGTGAATAGTCTTATGTTCCATCGTGAACTTGTCTGCTA
CTTAATCCTGTACTAACACTATGTTCCATCGTGTTCCTGTACGCTGGTACAAGACTAGCA
AGCCTCTAAACTGTGGTCTTTTGTGTATATACATCAGTGGTATTAAGTGGCCAAAAAAAA
AAAAAAAAAGCCTATTTTGTTGTTGAGCTAGTTACCACTGCCTACTTTGGCAGTCATTTC
TAACTTGTTGGTGGAGCATCTTATTTCTGGATTATATGCCAATTTACATTTTTTTTGTTA
AAAAAAAAAAAAAAAA

Homology of Contig U35_17435 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi5g25780.1	554	2e-60
Arabidopsis v10	None