- Probe CUST_11564_PI390587928
- Source Contig U35_31729
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_11564_PI390587928 | Hv_44K_v2 | GTTGATGGTCCTTCAAGCAAGGACTGGAGAGGTGGAAGGGCTGCTAGCTTCACATCATTC | 459 | GeneList: plum2 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.342 | 0.431 | 1.154 | 1.654 | 1.108 | 1.288 |
| Raw | 8911.367 | 16719.120 | 41006.467 | 89830.467 | 22115.200 | 27668.333 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_72170.2 | 1440 | 7e-23 | 827 - 887 | 98 | 60 / 61 | plus | ABC00149 ABC00235 ABC00865 ABC36987 ABC38238 ABC39188 ABC48865 ABC51028 |
| MLOC | MLOC_72170.1 | 1389 | 7e-23 | 841 - 901 | 98 | 60 / 61 | plus | ABC00149 ABC00235 ABC00865 ABC38238 ABC48865 |
| JLOC1 | JLOC1_48005.1 | 1772 | 4e-23 | 797 - 857 | 98 | 60 / 61 | plus | |
| Harvest21 | ABC32181 | 555 | 1e-23 | 314 - 374 | 98 | 60 / 61 | plus | |
| Harvest21 | ABC00865 | 1659 | 1e-23 | 639 - 699 | 98 | 60 / 61 | plus | ABC00865 |
| Harvest21 | ABC00356 | 1440 | 1e-23 | 731 - 791 | 98 | 60 / 61 | minus | |
| Harvest21 | ABC00235 | 1468 | 1e-23 | 384 - 444 | 98 | 60 / 61 | plus | ABC00235 |
| Harvest35 | U35_31729 | 519 | 3e-25 | 460 - 519 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_119 | 1408 | 1e-23 | 660 - 720 | 98 | 60 / 61 | plus | |
| Harvest35 | U35_76 | 1947 | 1e-23 | 384 - 444 | 98 | 60 / 61 | plus | |
| Harvest35 | U35_49 | 1405 | 1e-23 | 684 - 744 | 98 | 60 / 61 | plus |
Contig Sequence (519 bp)
>U35_31729 519 Hv_44K_v2 GCAATCTCGAAAAGCTGTCCCAATCCTCGATCTGTTCTCGACCCTCCTCCGTCCACCGCA NCTTCAGATTTCCCCATGGCTCCCATCANGATCGGCATCAACGGTTTCGGCCGGATCGGC AGGCTTGTGGCCAGGGTTGCGCTCCAGTGCCCCGATGTCGAGCTCGTCGCCGTCAACGAC CCGTTCATCACCACCGGTGTTTTCACTGACNAGGACNAGGCTGCAGCTCACATTAAGGGT GGTGCCNAGAAGGTCATCATTTCTGCTCCCAGCAAGGACGCTCCCATGTTTGTCTGTGGT GTCAACGAGAAGGAATACNAGTCAGACNTCGACNTTGTCTCCNATGCTAGCTGCACCACC NACTGCCTTGCTCCTCTTGCTNAGGTTATCANTGACAGGTTTGGCATTGTTGAGGGTTTG ATGACCACTGTCCATGCCATGACTGCNACCCAAAAAACTGTTGATGGTCCTTCAAGCAAG GACTGGAGAGGTGGAAGGGCTGCTAGCTTCACATCATTC
Homology of Contig U35_31729 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os08g03290.4 | 263 | 1e-52 | protein|glyceraldehyde-3-phosphate dehydrogenase, putative, expressed |
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | AT3G04120.1 | 338 | 4e-51 | | Symbols: GAPC, GAPC-1, GAPC1 | glyceraldehyde-3-phosphate dehydrogenase C subunit 1 | chr3:1081077-1083131 FORWARD LENGTH=338 |