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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_11563_PI390587928Hv_44K_v2CTCGAGTCAGAAACTTGACATTCTGTAAGTATTTCCATTGAATAAAACGAACAGAGGTTA618GeneList: blue
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.4291.4281.0020.8970.3860.479
Raw 380.113586.976365.670516.49078.294105.234



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
JLOC1JLOC1_26086.18928e-25796 - 85510060 / 60plus
Harvest21ABC0867413043e-251219 - 127810060 / 60plus
Harvest35U35_174367043e-25619 - 67810060 / 60plus



Contig Sequence (704 bp)

>U35_17436 704 Hv_44K_v2
TAAAATGCCTGAACAGCGAGCATTGCTTGCAGAACCAAACAGGCTGGAGGTGTTGCAATT
GGATAATGAAATTGTTTTCAATGAGGCTATCATTGAGGAAAGGGAGCAGGCGATTTTAGA
CATCCAACAGCAGATTGGTGAAGTGCATGAAGCATTTAAGGATCTTGCTACGCTCGTGCA
CGCGCAAGGAGGCGTAATAGAGGAAATCGACACCAACATTGATAACTCTGCAGCCGCGAC
CAATGAAGCAAAGAAAGAAATCGGCAAAGCATCGAAGACACAGAAGTCAAATTCATCCTT
GCTTTGCCTGCTTATGGTGATCTTTGGGGTTGTGTTGCTTATCGTGATAATAGTTTTGGC
ATCTTGAGACACAAATGCTTAGAGGCGTGTTGGCGCACTCGGAGGAGCCATATTACGTGC
AAGATTAATCCTCGCTGTGCGCCGAGCCGTCGAATACTGTCGCTAACTGAAGTGTGCATT
TTCTTCTTTCCCCCTCTTTTTTCCTTGTGGTTTGTGAGTGTGTATTCTTATGTGGCGTGA
GTCCATTTTTTTCCACGGCTTGCCCTGAGTGAACTGCGATTCTCTTTTTTCTCCTACAAA
GGTTTATTTGCTGCTTTGCTCGAGTCAGAAACTTGACATTCTGTAAGTATTTCCATTGAA
TAAAACGAACAGAGGTTATTCCGTCTCAAAAAAAAAAAAAAAAA



Homology of Contig U35_17436 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os02g47440.31738e-51protein|syntaxin, putative, expressed
Brachypodium v1_2Bradi3g52640.12679e-51
Arabidopsis v10None