barSeed - Barley Seed Development Database

Probe CUST_1155_PI390587928

Source Contig U35_21143

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1155_PI390587928	Hv_44K_v2	GTCTGCTTGTACTCCCTCCGTTCCAAAATAGTTGTTGTTGGGGGATTTCAGGACAAAAAA	1324	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.533	1.524	1.148	0.807	0.361	0.370
Raw	12805.267	19528.243	13055.233	14036.543	2247.480	2494.553

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_61904.6	4850	2e-23	4789 - 4846	100	58 / 58	plus	None
MLOC	MLOC_61904.2	4947	2e-23	4886 - 4943	100	58 / 58	plus	None
JLOC1	JLOC1_40476.2	5286	1e-23	4785 - 4842	100	58 / 58	plus
JLOC1	JLOC1_40476.1	5389	1e-23	4888 - 4945	100	58 / 58	plus
Harvest35	U35_21143	1395	3e-25	1325 - 1384	100	60 / 60	plus

Contig Sequence (1395 bp)

>U35_21143 1395 Hv_44K_v2
CCGGAAGCTGCTGTGTTTGTGGATAACTGCAATGTGATCTTGAAGGCAATCATGGACAAA
TGTGGGGATTCTGATGACTGTGTCTCAACTTCTGAAGCTGCTGAACAAGCAGCTAAACTT
GCTGAAGAGAATATTAAGAACCTTCCTGTCCCTGGTGAAGTAGAATTCATAAATGGTGGC
CCTCCCTGTCAGGGCTTTTCTGGCATGAACAGATTCAACCAAAGCCCGTGGAGTAAAGTT
CAGTGTGAGATGATTTTAGCATTCCTCTCTTTTGCGGAGTATTTTCGCCCCAGATTCTTT
CTTTTAGAAAATGTCAGGAATTTTGTTTCGTTCAACAAAGGGCAGACCTTCCGACTGGCA
GTTGCATCTCTTCTGGAAATGGGTTACCAGGTTCGTTTTGGAATCTTAGAAGCAGGGACT
TTTGGCGTTGCTCAGTCCAGGAAAAGGGCATTCATTTGGGCTGCTGCTCCTGGAGAGAAT
CTTCCTGATTGGCCAGAACCGATGCATGTGTTTGCTAGCCCTGAACTGAAAATAACACTG
CCTGATGGCAAATACTATGCAGCTGCCAAAAGCACTGCTGCTGGGGCGCCTTTCCGTGCA
ATAACTGTTAGAGATACAATTGGGGATTTGCCGAAAGTGGAAAATGGTGCAAGTAAACTC
ATACTTGAGTATGGAGGTGAGCCTACCTCTTGGTTTCAGAAGAAGATCAGAGGTAGCACT
ATTGCTTTGAATGATCACATATCTAAGGAGATGAATGAACTAAATCTCATAAGATGCAAA
CACATTCCCAAGCGACCTGGCTGTGACTGGCATGACCTGCCAGATGAGAAGGTGAAGCTA
TCTTCTGGGCAAATGGTGGACCTGATACCTTGGTGCTTGCCTAACACCGCCAAAAGGCAC
AACCAGTGGAAGGGGCTGTATGGGAGGTTAGATTGGGAGGGCAATTTCCCTACATCTGTG
ACTGATCCTCAGCCGATGGGTAAGGTCGGCATGTGCTTCCACCCTGACCAGGATAGGATT
ATCACGGTCCGTGAATGTGCCCGATCTCAGGGCTTTCCTGACAGCTACCAGTTTGCGGGC
AACATCCAGAGCAAGCACCGGCAGATTGGCAACGCTGTGCCACCCCCTCTTGCCTTTGCG
CTTGGGAGGAAGCTGAAGGAAGCTGTCGATGGGAAGCGCCAGCAGGCCTCACTGCGTCTG
TAGAACTCCCAAGGGGCAGAAGCACCAGCATTTAGTTTCCAGCATTCAAGCCACATGCTG
ATGTGACGATGTGAACTATCATGAATTTTCTTAGTTGACTGTGATTTTATTGGTGATATG
GATGGTCTGCTTGTACTCCCTCCGTTCCAAAATAGTTGTTGTTGGGGGATTTCAGGACAA
AAAAAAAAAAAAAAA

Homology of Contig U35_21143 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os07g08500.1	378	protein\|C-5 cytosine-specific DNA methylase, putative, expressed
Brachypodium v1_2	Bradi1g55287.1	1493
Arabidopsis v10	AT5G49160.1	1534	\| Symbols: MET1, MET2, METI, DDM2, DMT01, DMT1 \| methyltransferase 1 \| chr5:19932501-19938186 FORWARD LENGTH=1534