barSeed - Barley Seed Development Database

Probe CUST_11558_PI390587928

Source Contig U35_43703

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11558_PI390587928	Hv_44K_v2	ATCATCATCAGGCTCTGAAGAAACGGAGAAAAAGTAACTAACCGGTGGTTCTTGCCTACC	55	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK249803.1	1262	7e-23	99 - 155	100	57 / 57	plus	ABC10709
MLOC	MLOC_5336.1	3636	7e-23	3389 - 3445	100	57 / 57	minus	ABC10709
JLOC1	JLOC1_3425.1	2256	4e-23	247 - 303	100	57 / 57	plus
Harvest21	ABC40658	329	3e-25	56 - 115	100	60 / 60	plus
Harvest21	ABC10709	1013	1e-23	90 - 146	100	57 / 57	plus	ABC10709
Harvest35	U35_43703	329	3e-25	56 - 115	100	60 / 60	plus
Harvest35	U35_449	1257	1e-23	98 - 154	100	57 / 57	plus

Contig Sequence (329 bp)

>U35_43703 329 Hv_44K_v2
TGAGAGCTCAGCTGGTAGAAGAGAAGAGAAGAGAAGAGAAGAGCAGGAAAGGGAGATCAT
CATCAGGCTCTGAAGAAACGGAGAAAAAGTAACTAACCGGTGGTTCTTGCCTACCGCCAG
CGGTCATACGCCGCGGGAAGGGCTCTGGCTCTCGGCGCTGGACCTGGTGCTGGCCAACAG
AGGCCACACCCCTCTCGTCCATGTCTACAGCGCCAGCGACGTCGCCCGCCGCCAACGGGC
TTCTTCAACGTGGCCAAGCTCAAGAAGTCCATGGCGAAGGCGCTGGTGCCCTTCTACCCG
CTCGCCGGCCGCCTCGGTGCGGATCGTGA

Homology of Contig U35_43703 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None