barSeed - Barley Seed Development Database

Probe CUST_11557_PI390587928

Source Contig U35_29410

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11557_PI390587928	Hv_44K_v2	CGGAGTAGCATTTGACCGATCGAGCTAATTCTTGGTTTAAGAAATGTACTATTAAATCGT	463	GeneList: bisque4 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.933	2.320	1.281	0.821	0.394	0.351
Raw	16.258	65.108	30.966	32.359	3.359	3.136

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_38162.1	2527	2e-24	2355 - 2414	100	60 / 60	plus	None
JLOC1	JLOC1_24791.1	2333	8e-25	2165 - 2224	100	60 / 60	plus
Harvest21	ABC28682	523	3e-25	464 - 523	100	60 / 60	plus
Harvest35	U35_29410	523	3e-25	464 - 523	100	60 / 60	plus

Contig Sequence (523 bp)

>U35_29410 523 Hv_44K_v2
CGACGAACCTGAGGCAGTACCACAAGAACTACCAGCGGGAGACGTGGAACCGGGTGCTGA
CCCTGCTCCGCGATGACGGCGTGCTGACGGTGAAGGGGCACGTGCAGAAGCCGCTGCTCA
AGGAGCGGTTCAAGCAGTTCAACTCGGCCATGGACGAGATCCAGAGGACGCAGGGAGCGT
GGGTGGTGAGCGACGAGCAGCTGCAGTCGGAGCTCCGGGTTTCCATCGCCGCCGTGGTGG
TGCCGGCGTACCGGTCGTTCCTGGGGCGGTTCGCGCAGACGTTCAGCGCCGGGAGGCAGG
CGGAGAAGTACGTGAAGCTGAGCGCGGAGGACCTGGAGGGGATCATCGACGAGCTCTTCG
ACGGTAACCCCTCGTCCATGAGTAGGAGGAGGACATGATAAATACAGTAATAAACCCCAG
CAACACCAATTGATCGATCCATTGTTTAAGTTTAAAGGGGGATCGGAGTAGCATTTGACC
GATCGAGCTAATTCTTGGTTTAAGAAATGTACTATTAAATCGT

Homology of Contig U35_29410 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g06840.1	701	4e-74	protein\|ATEXO70C2, putative, expressed
Brachypodium v1_2	Bradi4g41750.1	695	6e-80
Arabidopsis v10	None