barSeed - Barley Seed Development Database

Probe CUST_1154_PI390587928

Source Contig U35_21144

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1154_PI390587928	Hv_44K_v2	TGCAGAGAATGTCATCATATCCTCACCAAGAGCCGCAATACAATAATATTGAACTGATTC	943	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_209.1	3009	2e-24	2159 - 2218	100	60 / 60	minus	ABC19281
JLOC1	JLOC1_141.2	2995	8e-25	792 - 851	100	60 / 60	plus
JLOC1	JLOC1_141.1	2989	8e-25	786 - 845	100	60 / 60	plus
Harvest21	ABC24935	648	3e-25	586 - 645	100	60 / 60	plus
Harvest35	U35_21144	1006	3e-25	944 - 1003	100	60 / 60	plus

Contig Sequence (1006 bp)

>U35_21144 1006 Hv_44K_v2
TCGAGCACTGTTGGCCTTTGGAAAAAAAGGAAAGAAAAGCCACGATTGGTAACGAGCACA
ACCTGCTTCTGCCGTTCCACGACGACGTCTCCCAATCTCCTCCTCTTCCACCATCCCCCC
GCCGCCGGCCGAGCCCTACAGCGGCCCGCGCCGCCGCCGCTGCCGCCGCCGCCGTCCGGC
CTTCCACCCCCTCCCGCGGAAGCGCAACGCCCGGGAGTCTCCCCTCCCCCTCCTCCTCCC
CCGCGTCTCCTCTGCTCGATTGGCTCGGAGCGGACGGGAGATCCATCCAGGCTGTGTTGC
TAGCCACGGATTTGCTCGCTGCCTCGCCTCGTGCTAGCGGAGCCTCTTCACGGTTCGGCT
CGGCTCTGCTCTTCGAGATCTCAGCTTGTTTTCAAGGAATTTTGGGGGTTCAGGAACCCC
CGCGCTATGGAGCCAGGTGATACCAAATTTGATGCATCACAGTATGCTTTCTTTGGTAAC
AATGTCTTGGAGGAGGTTGAGCTAGGTGGATTGGATGATGATGATGCTGGTGATGCTGGT
TTTGTTGGGCCCGGTGACGAAGAATACACTCCTAATTATGGAAGGGATATGTTGGAGGAC
GAAGGTGTAGGTTCATTTACTGGTGTTGATGATCTTGCCGGGGCATTCTCAAAGCTGTCC
AGAACTGTTAACAAACCAAAGCAATCAGGAATAGTTAGTCGTGGGGGATCGTTACCTGGA
CAAACTTCCTCTGCTGACTGGACACAAGAGGCTGAATCATCATACTGGCCTAAACAGCCT
GCATTGGACGCTGAACAACGGCTGGACAACAAAAACTGGTGGTCTCAACCACCCCATTCA
GACCAGTTTGCTGACTCCAGACTTCAGAGGACATCCTCATCCCCGCAACAAGATGCTCAG
TATAATCCTATTGAACCTATTCTCGGACCAAGGCCATCTCCTTTGCAGAGAATGTCATCA
TATCCTCACCAAGAGCCGCAATACAATAATATTGAACTGATTCGTG

Homology of Contig U35_21144 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g19220.2	831	4e-66	protein\|expressed protein
Brachypodium v1_2	Bradi4g36450.1	723	6e-77
Arabidopsis v10	None