barSeed - Barley Seed Development Database

Probe CUST_11548_PI390587928

Source Contig U35_43709

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11548_PI390587928	Hv_44K_v2	ACGACGTGGACTCCCTGGACCAGAACCTTGCACAGAACCTGGCGGGTGAGATCATCGGCA	360	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65066.1	1663	2e-24	1142 - 1201	100	60 / 60	minus	ABC01888 ABC31751
MLOC	MLOC_65066.2	1501	2e-24	884 - 943	100	60 / 60	minus	ABC01888 ABC31751
MLOC	MLOC_65066.3	1561	2e-24	775 - 834	100	60 / 60	minus	ABC01888 ABC31751
JLOC1	JLOC1_42787.1	1902	8e-25	510 - 569	100	60 / 60	plus
Harvest21	ABC45593	384	3e-25	249 - 308	100	60 / 60	plus
Harvest21	ABC40672	579	3e-25	361 - 420	100	60 / 60	plus
Harvest21	ABC01888	1275	3e-25	379 - 438	100	60 / 60	plus	ABC01888
Harvest21	ABC41096	397	1e-24	314 - 372	100	59 / 59	plus
Harvest35	U35_43709	579	3e-25	361 - 420	100	60 / 60	plus
Harvest35	U35_14281	1265	1e-23	381 - 440	98	59 / 60	plus

Contig Sequence (579 bp)

>U35_43709 579 Hv_44K_v2
CCCGCACCGAGACCAAATCCTCGCTAGGGTTTTACTCCCGCGCCGCCGCCCGTCCCCAAA
TCTCCCCCGGAAAGGCCACCATGGCCGGCGGTCCCGCGGCGGTCTCGTTCCTCACCAACA
TCGCCAAGGCGGCGGCGGGCCTCGGCGCCGCGGCCTCCCTCCTCTCCGCGTCGCTCTACA
CCGTGGACGGCGGCGAGCGCGCCGTCGTCTTCGACCGGTTCCGCGGGGTGCTGCCGGACA
CCGTCGGCGAGGGCACCCACTTCATCGTGCCGTGGCTCCAGAAGCCCTACATCTTCGACA
TCCGCACCCGCCCGCACAACTTCTCCTTCGGCCTCGGGAAGCCCGCGGAGTACCTGCAGT
ACGACGTGGACTCCCTGGACCAGAACCTTGCACAGAACCTGGCGGGTGAGATCATCGGCA
CCCGGTTCGAGGACGCCGACGTCAAGTCCACCCCGTTCCAGCCCTACGCGGAGGTGTTCG
GCCTCCAGAGGTTCCGCGAGTGCGAGCTCATCCACGGCCGCTGGGCCATGCTCGCCACCC
TCGGCGCCCTCACCGTCGAGTGGCTCACTGGCGTCACCT

Homology of Contig U35_43709 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi1g24870.1	289	4e-51
Arabidopsis v10	None