barSeed - Barley Seed Development Database

Probe CUST_11540_PI390587928

Source Contig U35_31734

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11540_PI390587928	Hv_44K_v2	AGGAGTTCTTCATTAAGAAGAACCTCAGCGTCGACCAGTTGCCCCCGATCCCCCCGTACT	417	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_64016.1	1531	2e-24	801 - 860	100	60 / 60	minus	ABC15214 ABC24352
JLOC1	JLOC1_41992.1	1379	8e-25	487 - 546	100	60 / 60	plus
Harvest35	U35_31734	540	3e-25	418 - 477	100	60 / 60	plus

Contig Sequence (540 bp)

>U35_31734 540 Hv_44K_v2
AAAAAAATCCATCCACCACAATGGCTGAGGCGTCGGCTCTGCCTCTGCAGCTCCTGGTGG
CCGCGTTCCTTGCTCTGTCTGTGGCCACGACGGCGTATGCGTCGCCTGCGCCGGCGAACC
GGAGCAGGTGCTACAAGCGTCTGTTCAGCTTCGGCGACTCCCTGATCGACACCGGCAACT
TCGTCGTCCACTACGCCAATGCGTCGGGACCCGTCCTGGCGTTGCCCTACGGCGAGACCT
TCTTCGGCCGCCCCACCGGCCGCTGGTCCGACGGCCGCCTCGTCGTCGACTTCATCGTGG
AGAGGCTGGGGTTCCCGTACTGGCCGGCATACCTGCAGGCGGCAGCCGGGAAGTCGCCGG
CCGAGAAGTTCCGGTACGGTGCCAATTTCGCTGTGGCGGCCGCCACGGCGCTGAGCCAGG
AGTTCTTCATTAAGAAGAACCTCAGCGTCGACCAGTTGCCCCCGATCCCCCCGTACTCCC
TCGACGTGCAGATCGGCTTGTTCAAGAAACTGCTCGCCATTCTCGGCTCCACGAACCAAG

Homology of Contig U35_31734 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g44780.1	392	2e-53	protein\|GDSL-like lipase/acylhydrolase, putative, expressed
Brachypodium v1_2	Bradi1g19840.1	388	3e-59
Arabidopsis v10	None