barSeed - Barley Seed Development Database

Probe CUST_1153_PI390587928

Source Contig U35_21145

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1153_PI390587928	Hv_44K_v2	ACTTTGTTCGTGAGATGCAAGTATTTTTGTATCGGTTTTGCTAGAACTGATCTAACTGAG	927	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.951	1.939	1.166	0.843	0.379	0.392
Raw	1249.240	1894.840	1027.350	1154.087	184.637	206.377

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_23411.1	1126	8e-25	1024 - 1083	100	60 / 60	plus
Harvest35	U35_21145	1008	3e-25	928 - 987	100	60 / 60	plus

Contig Sequence (1008 bp)

>U35_21145 1008 Hv_44K_v2
GGATTTATGCCGGCCAAAGCAACAATATTCAACAAAAAGTGCAATCCTCTTCATGAGCTT
GGTGAAGGCCCTTATAATACGATAAGATGGAACCCTAAAGGGCGATTTATTGTTATAGCT
GGATTTGGTAATTTGCCTGGTGATATGGCTTTCTGGGATTATACAGAAAAGAAGTTGATA
CAGAAAGCAAAGGCTGAATGGTCTGTCATAAGTGAATGGTCCCCTGATGGTCGCCATTTT
ATGACTGCTACAACAGCTCCAAGGCTTCAAATAGATAATCGAATAAAAATATTTGACTAC
ACTGGATCTCTGCAGTTTAAGAAGGATTTTGAAAAACTGTATCAGGTTGACTGGAAACCA
GAATCTCCTGAAAGATTTGGTGACATTGCTGACCTCACGATATCTTTGAATAGCATAAAA
ATTGAAGAAACAAAGAAGCAAGGACAAGGTTCTAAATCGGCACAAACATCAAGCAAGGCT
CCTGTAAATGTAGCGACAAAACCTGCAGGAGCATACCGTCCACCTCAATCAAAGCACACT
GCAGCGCTTCAAGATAAGCTTTTTGGTGGCCTTGCTCCTACCGGAGGGGAGATGAGCAAA
ACTGCATTGAGAAATAAGAAGCGCAGGGAGAAGCAGAAGGAGAAAAAGGCTGGGGAAGGC
TCTTCCGCTGATGACAGCTGATCCACTGGCTTATTTTGGCATTTTTCGCTGCCGAGTGAA
ATTCGTAGTGACAAATAGTTCCTTCGTTTTGAATTTTTTTTTTGGCCATCTTGTGAATGT
GAAATGACGGTTTCCAGTTGCACTGTAATATGTGAGATTCGAGTCAGAGTATTGCACCAG
AATGACCTTAGAATTTTATTTTACTTTTGGCGTTGAACGCACAGGTAGTTTGTGTAACTA
TATCACAGAAAACAGTGGAGGTATTTTACTTTGTTCGTGAGATGCAAGTATTTTTGTATC
GGTTTTGCTAGAACTGATCTAACTGAGTTTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_21145 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g39350.1	523	6e-116	protein\|eukaryotic translation initiation factor 2A, putative, expressed
Brachypodium v1_2	Bradi3g48210.1	522	7e-123
Arabidopsis v10	AT1G73180.1	513	5e-85	Eukaryotic translation initiation factor eIF2A family protein \| chr1:27518335-27521432 FORWARD LENGTH=513