barSeed - Barley Seed Development Database

Probe CUST_11529_PI390587928

Source Contig U35_26073

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11529_PI390587928	Hv_44K_v2	ATACCTACAGGCTTGGCCATAGATTACCAAATGGTACCCGCATCTGGAGCAAGTCATATA	662	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK359281	2275	7e-23	825 - 884	98	59 / 60	plus	ABC12113
MLOC	AK364513	2267	7e-23	890 - 949	98	59 / 60	plus	ABC12113
MLOC	MLOC_42.2	1917	7e-23	550 - 609	98	59 / 60	plus	ABC12113
MLOC	MLOC_42.1	1936	7e-23	551 - 610	98	59 / 60	plus	ABC12113
JLOC1	JLOC1_31.2	1973	4e-23	546 - 605	98	59 / 60	plus
JLOC1	JLOC1_31.1	1982	4e-23	551 - 610	98	59 / 60	plus
Harvest21	ABC23818	723	3e-25	663 - 722	100	60 / 60	plus
Harvest35	U35_26073	723	3e-25	663 - 722	100	60 / 60	plus

Contig Sequence (723 bp)

>U35_26073 723 Hv_44K_v2
CGTCGAGAGGACCACCCTCGCCGTCGACGGGGCGGCGCACGTCAAGGCGTCCCCTACGGT
TCTTGGACTCGAGGGCCAGGACAGTGGATGGGTAGAGCTGGAGTTCTTCCATCCCGACCC
CTCCGGTGATGACTGGATCGGTGTCTTCTCTCCTGCCAATTTCAGTGCTGCGATTTGTGA
GCCTGAGAATAAGAGGCAATATCCTCCAGTGCTATGCACAGCACCTATCAAGTACCAATT
TGCAAAGTTCAAGAATGACGGGTATAGTAAGTCTGGAAAGGGCTATCTGAAGCTTCAACT
GATCAACCAGAGAGAAGATTTTTCATTTGCACTTTTTTCTGGGGGACTGTTGAAGCCGAA
GCTGATTGCTGTCTCAAACAAGGTGGAATTCACGAATCCGAAGGCACCCGTCTACCCACG
TTTGGCGCAAGGGAAGTCTTGGAACGAAATGACAGTCACTTGGACGAGTGGATACGACAT
CAAAGAAGCAGTTCCTTTTGTTGAATGGGGTGAAAAAGGAGGACGCCGGTTCCTTTCTCC
AGCCGGGACATTGACATTCGACAGAAACAGCATGTGCGGTGCACCAGCACGAACTGTTGG
TTGGCGCCATCCTGGTTACATTCATACTAGTTACTTGAAGGATCTGTGGCCAGACTCGAT
GTATACCTACAGGCTTGGCCATAGATTACCAAATGGTACCCGCATCTGGAGCAAGTCATA
TAG

Homology of Contig U35_26073 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g38750.2	608	2e-160	protein\|nucleotide pyrophosphatase/phosphodiesterase, putative, expressed
Brachypodium v1_2	Bradi4g03787.1	617	4e-163
Arabidopsis v10	AT1G13750.1	613	1e-114	Purple acid phosphatases superfamily protein \| chr1:4715490-4718091 REVERSE LENGTH=613