barSeed - Barley Seed Development Database

Probe CUST_11513_PI390587928

Source Contig U35_26080

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11513_PI390587928	Hv_44K_v2	AATCCTGTGCGATCACCAGATCGAAGAAGAATGCGGGCATCACTCGAAGGCCAAAGCCCG	538	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_52795.5	2612	7e-23	2028 - 2087	98	59 / 60	plus	ABC06775
MLOC	MLOC_52795.2	3453	7e-23	2751 - 2810	98	59 / 60	plus	ABC06775
JLOC1	JLOC1_33845.3	2784	4e-23	2121 - 2180	98	59 / 60	plus
JLOC1	JLOC1_33845.2	3373	4e-23	2710 - 2769	98	59 / 60	plus
JLOC1	JLOC1_33845.1	3467	4e-23	2804 - 2863	98	59 / 60	plus
Harvest21	ABC24395	645	3e-25	539 - 598	100	60 / 60	plus
Harvest35	U35_26080	645	3e-25	539 - 598	100	60 / 60	plus

Contig Sequence (645 bp)

>U35_26080 645 Hv_44K_v2
TGCTGGCGGACGTCGGCACGTGCTTGCTGGTGATCATGTACAGCATGATGCTGCTGAGGG
GGGGAGACGGTGCTCGCCATGGGCCTCGCTCTCACATCGAGAAGCATGGCACGTCGGCGT
CCCACCACCACCATTGCTCCGACGGTCCGTGCAAATCAGCAGGCGGCTGCGGGGATTCGT
CTGCTGGTGGCCATGCTTGCGGCGATGAACATCATTGTCACGGGCATGGCGACCGCGAAG
AGCCGGGCAGCCCGCACCACCACGGATGTGAAGATCATGGGCATGGCCACGGCCACTGCA
AAGAACCGAGCAAGCTGCACCCCATGGACAGCCATCGCTGTCAAGATCATGGCCATGGCC
ATGGCCACAGCCACTGCAAAGAGGCGAGCATCAAGCTGGTCACAAGCAAGAACATTTCCC
ATGGCCATGGCCATAGCCACTGCAAAGAGAAGCACGATGAGCACAGCACCAACTCGGTTG
AGTCGTCAACCCAAGAGCACTCCATCCTGATCGACGAATCAGCTGCTGCCCAACAACAAA
TCCTGTGCGATCACCAGATCGAAGAAGAATGCGGGCATCACTCGAAGGCCAAAGCCCGCG
CCACGGCTCGTCCGACCGACTGCGGCAGCCTCAGCCTCCGCCGCG

Homology of Contig U35_26080 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None