barSeed - Barley Seed Development Database

Probe CUST_11510_PI390587928

Source Contig U35_26082

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11510_PI390587928	Hv_44K_v2	TCTGCGCCGAGGAGATGGACATCACTGACCAGCAACTCAAGCCCTGCAAATGTGGCTACG	319	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55862.1	4558	2e-24	4054 - 4113	100	60 / 60	minus	ABC11791
MLOC	MLOC_55862.2	4410	2e-24	3935 - 3994	100	60 / 60	minus	ABC11791
JLOC1	JLOC1_36073.1	4534	8e-25	471 - 530	100	60 / 60	plus
Harvest21	ABC22711	379	3e-25	320 - 379	100	60 / 60	plus
Harvest35	U35_26082	379	3e-25	320 - 379	100	60 / 60	plus

Contig Sequence (379 bp)

>U35_26082 379 Hv_44K_v2
CCCCTCCCCAGCACAAGCCCGGCGCAGCACATACATACATACATACATACACACACATCG
ACTCAACTTCCCTCTTTCTCCACCGAAAGTCCAACCTTTTCGCTCCCAATCCACCACCCA
TCGCCCACCACCAATCCCCCCTCCCTCCCCCGCCCCCTCTCCCTCGGGGGGGTGATTCGA
TCAGAGAGAGCCCCCGCCCCCGCCCACGCCACCAGACCTCGACCAGTCAATCCCCTCTAG
GGTTTCGCCTCTCGCGCCGCCCAATCGGATCCACCTCCAATGATGACGATGAGCGATGAC
GGAGACCGCACCTGCCCGCTCTGCGCCGAGGAGATGGACATCACTGACCAGCAACTCAAG
CCCTGCAAATGTGGCTACG

Homology of Contig U35_26082 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None