barSeed - Barley Seed Development Database

Probe CUST_1150_PI390587928

Source Contig U35_21148

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1150_PI390587928	Hv_44K_v2	TGGACGTCTGATTAATGCTAATCAACATCTTTTGGCACTTCGCATCTCTGAGTACCTTAA	1148	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK366119	2948	2e-24	1506 - 1565	100	60 / 60	plus	ABC12611
MLOC	MLOC_70589.2	1001	2e-24	343 - 402	100	60 / 60	plus	None
MLOC	MLOC_70589.3	1763	2e-24	326 - 385	100	60 / 60	plus	ABC12611
MLOC	MLOC_70589.1	1699	2e-24	357 - 416	100	60 / 60	plus	ABC12611
MLOC	MLOC_70589.4	1859	2e-24	269 - 328	100	60 / 60	plus	ABC12611
JLOC1	JLOC1_46854.2	1911	8e-25	362 - 421	100	60 / 60	plus
JLOC1	JLOC1_46854.1	1916	8e-25	362 - 421	100	60 / 60	plus
Harvest21	ABC27561	591	3e-25	529 - 588	100	60 / 60	plus
Harvest35	U35_21148	1211	3e-25	1149 - 1208	100	60 / 60	plus

Contig Sequence (1211 bp)

>U35_21148 1211 Hv_44K_v2
ACCCACTCGCCTCCTCCCCTTGGACGCCCCACCTCCCCCGCCTCCACTCCCTCGCCTTCT
CCAGCTCCCTCAACCTCCTCGCCCTGCTCTCCGATGGTTCCCTCCTCCGTTTCCGCCTCC
CCGATCTGAATCCCATTACTAGCTCCAGCCCCGTACCCCTGCTGCCGCCTGCCTCAGGTG
GCGTCGCCGATGCTGTTTTCTGGGGAGGCGGCGTGGCTATCCTCACCGAGGACAACCGCG
TCGTGGTCACCACCGACATCGAGGTCGACGACCCCCACCCGCGGGAGCTCGCCGACCCGG
GCGTTGCCGAGGACGAGCAGGTGCTGTGCATGGCCGTGGTGGAGCCACAGTTCGTCATGT
CCGGGAGTCCAGAGGTTCTGCTTGCAGTTGGCGATCGGGTAGTGGCAGTTGACGAGGATG
GCGTGCAGGTGCTCGGAGAGGCCCTGGAGATTGGACCCGTGCAGAAAATGGCGGTGTCAC
CAAACGGAAAGCTGCTTGCAGCGTTTGCACATGATGGGCGCTTGCTCGTAATCCCCACGG
ATTTCTCCAGGATCATATTCGAGTATGAGTGTGATTCTGCATTACCACCGGATCAAATAG
CTTGGTGTGGGTTGGACAGTGTGCTCCTTTACTGGTCTGAAGTGCTTTTGATGGTTGGAC
CCAATGGAGATCCAGTGCAATACAATTATGATGAACCTGTAATGCTCATTCCAGAGTGTG
ATGGTGTAAGAATCCTCTCAAATTCAAGTATGGAATTTCTACACCGAGTTCCAGATTCTA
CTACATCAATTTTTGGCATTGGAAGCATGTCTCCAGCAGCATTACTGTATGATGCTAGAG
ATCACTACGACAAACAAAGTGCCAAGGCTTATGATAACTATCAGCTAATATCATCTTCCT
TGCCCGAGGCGATTGAAGCATGTATTGATGCTGCTGGATATGAATTCGATGTTTCACGCC
AACATACATTACTGAGAGCTGCGACTTATGGTCTAGCTTTCTGCAGTTGGCTTTGGCAGT
CGATTTCCACACGGACGCTTTCAAGAAATGTGCAAAATTTTACGGGTTCTAAATGCTGTT
CGTGACCCTGAGATTGGAATGCCGCTTACCGTGAAGCAGTACANACTGCTTACTGCAGCT
GTGCTCGTTGGACGTCTGATTAATGCTAATCAACATCTTTTGGCACTTCGCATCTCTGAG
TACCTTAACCT

Homology of Contig U35_21148 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g47650.1	885	0.0	protein\|vacuolar protein sorting-associated protein 16, putative, expressed
Brachypodium v1_2	Bradi2g45987.1	878	0.0
Arabidopsis v10	AT2G38020.1	858	4e-110	\| Symbols: VCL1, MAN, EMB258 \| vacuoleless1 (VCL1) \| chr2:15910098-15914190 REVERSE LENGTH=858