barSeed - Barley Seed Development Database

Probe CUST_11505_PI390587928

Source Contig U35_26085

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11505_PI390587928	Hv_44K_v2	CGTGTCGTGTTGTGTTTGCTTTGCATTTGAATTTTATAAACTCTGTCACCTTACCAAAAA	534	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.454	2.917	3.520	0.773	0.052	0.033
Raw	5193.455	15454.673	16587.267	5835.360	134.357	92.517

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_26085	606	3e-25	535 - 594	100	60 / 60	plus

Contig Sequence (606 bp)

>U35_26085 606 Hv_44K_v2
GCAAAGATCTCTCTTCCTTGCCACTCCTCCAGTCCTCTTCCCCGGCCAGCGCGAGCGAGA
GAGAAGTTGGTACCTGCAGGCAGCCATGGACGGTCACAACAGCCGCCCGCAGCGCCTGAT
TCTGGCGCTCGAGGAGGCGTTCAACAAGTGCCCCCACCCCGACGCGACCCAGCTCGCCGA
TCTCAGCCGTGACACCGGCATGGAGCCCCGGCAGATCAAATGCTGGTTCCAGAACCGGAG
GACGCAGATCAAGCCCTCGAGGTCTTCCCCCCAGGGATCTTCATCTTCAGATCCTTGATG
CTCTCGTTTCGACAACTTCGCCTTCATGCTGTGACTGTGACACATGGAGGAGCGTCATAC
AGATGGAGGCTGATGTTCGTCTCTACCGTGGTCTTCTTCGGCTTAGTGTCTGTGCGTGTG
TTTCGGCTTGTCAGCCAAACGACTACCTTCGAGTTTGTATCGTGTCATTGTTGTGTTTGT
GTGTGTGTGTGCGCGCGTCGGCTCTTGAGCCTTGGACCCTAGATGGGTTTGTATCGTGTC
GTGTTGTGTTTGCTTTGCATTTGAATTTTATAAACTCTGTCACCTTACCAAAAAAAAAAA
AAAAAA

Homology of Contig U35_26085 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None