barSeed - Barley Seed Development Database

Probe CUST_11503_PI390587928

Source Contig U35_26087

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11503_PI390587928	Hv_44K_v2	TAATTGTGCTGCTTGCTTTGTAACGTCGATTTGTGCAAGAATTCCGAGTGGAGCTGCAGT	543	GeneList: grey60 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	5.268	3.812	1.211	0.720	0.155	0.268
Raw	338.880	412.444	112.368	109.707	7.518	14.958

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_13595.1	574	2e-24	93 - 152	100	60 / 60	plus	None
MLOC	AK374871	1477	7e-23	1421 - 1477	100	57 / 57	plus	None
JLOC1	JLOC1_9215.1	1911	8e-25	1557 - 1616	100	60 / 60	plus
Harvest21	ABC48055	627	3e-25	544 - 603	100	60 / 60	plus
Harvest35	U35_26087	640	3e-25	544 - 603	100	60 / 60	plus

Contig Sequence (640 bp)

>U35_26087 640 Hv_44K_v2
GACCTGCAGTACCTGATCATGGAGAACAACCCGATGGGCGTGCCCCTGCCGCCCGAGCTC
GGCGGCATCGCGCGGCTGCAGGAGCTGCGGCTGGCCAACTCGGGCTACTCGGGGTCCATC
CCGGACACGTTCGGGCGGCTGACGAGCCTGACGACGCTGTCGCTCCAGAACAACAACCTC
ACCGGTAGAATCCCGGCGGGGCTGAGCCGGCTGAAGCGCATGTACCACCTGAACCTGAGC
AAGAACGGGCTGGACGGCGCCGTGCCATTCGACGGCGCGTTCCTGAGGCGGCTCGGCCGG
AACCTCGACCTCAGCGGCAACCCCGGGCTGTGCGTGGACGATCGGGCCGTCGTGAAGGAG
GTGGGCGTGGACGTCTGCGGCGGCGGCGACAGCTCCGTCGGCAGAGCGATCACGAGGGGC
GGCGCCATGTGGCCTGCCCTGCTCAGGCCATCCGCCTCCGCGCTGCTCTGCTGCTGCCTC
TTGCTCTGAGACTTTCATGACTGATGTAGTAGTTGCACTGATTAATCGCTCGCTCCGTGT
ATGTAATTGTGCTGCTTGCTTTGTAACGTCGATTTGTGCAAGAATTCCGAGTGGAGCTGC
AGTGGCAGGGCACAGTGGCGCGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_26087 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g45430.1	472	5e-56	protein\|TOO MANY MOUTHS precursor, putative, expressed
Brachypodium v1_2	None
Arabidopsis v10	None