barSeed - Barley Seed Development Database

Probe CUST_114_PI390587928

Source Contig U35_4813

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_114_PI390587928	Hv_44K_v2	TTAAATTCAAAGGAAGGTATGGTTGTTTCTTCTGATGATGACGATGCCTGGGAGACTGTA	1846	GeneList: darkorange MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.003	1.084	1.933	1.581	0.615	0.477
Raw	382.807	638.492	1006.038	1306.227	179.426	150.352

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK361510	2953	2e-24	1925 - 1984	100	60 / 60	plus	ABC10844 ABC21311
MLOC	MLOC_21877.1	1900	2e-24	905 - 964	100	60 / 60	plus	ABC10844 ABC21311
JLOC1	JLOC1_15166.1	3370	8e-25	905 - 964	100	60 / 60	plus
Harvest35	U35_4813	1906	3e-25	1847 - 1906	100	60 / 60	plus

Contig Sequence (1906 bp)

>U35_4813 1906 Hv_44K_v2
GGGGCTAAACCACACCGAAACCAACCCCTACGCCCTCGCCTCCGCCGCCGACCTCGCCCT
CGCCCCCCGCCCACCGATCGCCGGCTCCCTCCCCGCCCGCGCCGCCGCGCCGCGCCGTTC
CTGTGGCCGGCAGGGCAGCGCGGCCGCCGGCATCTAGGCGCCACCACCCCCGCGGCCGGC
CGCCCCCTTTGATGTCTCCCGCCCGCCGCCTCGGCTCCCTCTGCTCCCAGGCGGGTCCCC
GCGCGGTCAGCTCCACCCCCACATCCGCCCAGTGCACGGCATCCACACCGCAGCGGAGAT
GAGCGGCGCCGACAAGGTCGTGTTGTTTGGGTCCTTCACGGAGGATGAGACAAAGTTGTT
CCAGGGGCAGCCTGCTAAAAGTGAGGAGAAATCATGGGAACTACCTGAGATCCAGTTTGG
GTCACTGAATTTTTCTGTGCTAAGTTTAGAGAAAGTGTCGAATGCCATCACTGAAGGCTG
TGCCCATTCTCCAAAACCAACTTATGGCCATACAAAGGATCTCGCTGGCAGTGATAAGAA
GGAAACTGTAACATCTAGCTTACCAAATGGTGGACCAGTGCTGTTCAATGGATTTCCTGC
CGACGTTTCTCCTACTAATGGTATTCTCAAGAATGTGAAGTCTGAAGCTTCGGTTCCTTC
AGCTGGGCTGGCCAGCAATTTAAAGGAGACCAAAGCAACGGTTCCTTCAGCTGGCCCTGT
GAGCAATGTAAAGAAGAATGAAACTCCAGTTCCTTCAGCTCATCCTGTCAACGATGTAAA
GAAGAATGAAGCTAGGCCGATCAACAATGTAAAGAAGGAATGTACGGCCCCTTCAGCTGG
GCCTGTCAACAATGTGAAGAAGGCTGAAGCCACCGCTCCTTCAGCTGGGCCTGTCAACAA
TGTGAAGAAGGCTGAAGCCACCGCTCCTTCAGCTGGGCCTGTCAACAATGTGAAGAAGGC
TGAAGCTACCGCTCCTTCAGCTGGGCCTGCCAACAATGTGAAGAAGGCTGAAGCCACCGC
TCCTTCAGCTGGGCCTGCCAACAATGTGAAGAAGGCTGAAGCTATGGTTCCTTCAGTTAA
GCCTGCCAACAATGTGAAGAAGCCTGAAGCTAAGGTTCCTTCACCTGGGCCTGTCAACAA
TGTGAAGAAGGCTGAAGCTATGGTTCCTTCACCCGGGCCTGTGAACAAGGTTGAAGCTGC
GGCTCCTTCACCCGGGCCTGCCAACGATGTAAAGAAGACTGAATCTGTGGTTCCTTCAGT
TGCGCCTATCAAGAGCATTAGCAGTTCAACGCCAATTGCTGGGTCAGGGCCGCACCATGT
TGGTCTCAGATGTACAGAAAGCAGCGGTTCAGCTATGTTAGTAACTGAGAATGGAAGTGC
AGGTGCTGATGCACCTATTATTGCAGCTCCAGCAGATGAGTCTGTCACAAGTTCAAATGA
GGAGAATAAGCCTTTGCTTCCTCACGGTTTGAAGAATACTGGAAATATATGCTTCCTAAA
TGCAACTTTGCAGGCTTTCCTTTCATGCTTTCCTTTTGTTCAGCTTGTACAAGACCTGAA
GAACCGGAATATACCCAAGGCTGGCTACCCTACTCTGAGCGCGTTCATTGAGCTCGTCTC
TCAGTTTGATGTACTTGATGAGTCCACTATGAAGAAAGACGAGAGGTTTGCTTTAGTCGC
TGCAAAAGTAATCAATCCTACCATGTTTGATCAAGTTCTGAGAAATTTTACTCCAGATGT
ACCGGCTGGAACATCTGCTCGGCCAAGACAAGAAGATGCCCAAGAGTTTCTAAGTTTTGC
CATGGATAGAATGCATGATGAACTGTTGAGGCTTAATGGCAATGGTTTAAATTCAAAGGA
AGGTATGGTTGTTTCTTCTGATGATGACGATGCCTGGGAGACTGTA

Homology of Contig U35_4813 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g46660.2	556	1e-87	protein\|ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed
Brachypodium v1_2	Bradi1g18790.3	537	9e-146
Arabidopsis v10	None