barSeed - Barley Seed Development Database

Probe CUST_1149_PI390587928

Source Contig U35_21149

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1149_PI390587928	Hv_44K_v2	CGGTCAGGTGCTTCGAGAGAGGCACGATCAGCCCGAGACAGTGAAAGACATGATTCAAGA	734	GeneList: brown4 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.270	1.165	1.136	0.862	0.655	0.549
Raw	304.784	376.121	371.256	395.057	119.414	107.165

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK353767	1945	2e-24	748 - 807	100	60 / 60	plus	ABC14287
JLOC1	JLOC1_54432.4	1287	8e-25	793 - 852	100	60 / 60	plus
JLOC1	JLOC1_54432.3	2130	8e-25	816 - 875	100	60 / 60	plus
JLOC1	JLOC1_54432.2	1850	8e-25	536 - 595	100	60 / 60	plus
Harvest21	ABC14728	794	3e-25	735 - 794	100	60 / 60	plus
Harvest35	U35_21149	794	3e-25	735 - 794	100	60 / 60	plus

Contig Sequence (794 bp)

>U35_21149 794 Hv_44K_v2
GCACCGAGTCCAGCAAGCAGCTCGACGCGGCGGCGGCGCCGGAACCACGGCGGCGACGGC
GGCCCAGGTGAGGAATGGCGTCTACTGTGGACCGGAGGGATCAATCCTCCCGGAGGTCGG
GGCACACGAGGTCTCGTTCTCCAGCGAGGGAGCGCGTATCGCCTCCACGCAAGCAGAGCC
CGCCAGCTCGGAGGGAGAGGTCACGGCCTGAGAGGACTGGCTCGCCTAGGAGGTCAGGGC
ACACAAGGTCCCGTTCTCCGGCCAGGGAGCGTGTGTCGCCTCCACGCAAGCACAGCCCGT
CAGCTCGGAGGGAGAGGTCACATGCTGAGAGGAGTGGCTCGCCTAGGAGGCGGTCCCCTG
TTAAGGTTAGCCTTTCACATAGGGAGATGTCGCCACAGAGAGAAAAGGTGAAGGAGCGGG
TCAGGTCGCCGAAACATGCACGGTCCCCATCGCCTGCTGGGAAACGACAGTCTCGGTCGC
TCTCACCACGCTCCAAACGACTAAGGAGAGCTCAGGCTGAGCGGGAAGGGGCCGATGTAA
CTGAAGGTGACCGTCGGAGGCCTCCCAGTAGTGAAGACCGGGGCACAAGGAAGCACACGG
AGCGTGATGAGAGTGCGTCAAGGGATAGGAAGGTGGAGCCAAAAGATGATAGGAGTGCCT
TCACAGGTAGAAGACTGGATGATGATGATGATGGAAGGGGTCACTCAAGAGATAGAAGAA
CTGACAGGGATGATCGGTCAGGTGCTTCGAGAGAGGCACGATCAGCCCGAGACAGTGAAA
GACATGATTCAAGA

Homology of Contig U35_21149 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None