barSeed - Barley Seed Development Database

Probe CUST_11496_PI390587928

Source Contig U35_38065

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11496_PI390587928	Hv_44K_v2	TGATATCTATTCTTTCAAATAGGAGCTTGAATGAGTTAACATGTGCACTCTGTAGCTTCA	576	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK374884	2110	2e-24	986 - 1045	100	60 / 60	plus	ABC25676
MLOC	AK369333	4075	2e-24	2951 - 3010	100	60 / 60	plus	ABC25676
MLOC	MLOC_3433.4	566	2e-24	113 - 172	100	60 / 60	plus	None
MLOC	MLOC_3433.1	994	2e-24	337 - 396	100	60 / 60	plus	ABC25676
MLOC	MLOC_3433.2	900	2e-24	336 - 395	100	60 / 60	plus	ABC25676
MLOC	MLOC_3433.3	989	2e-24	322 - 381	100	60 / 60	plus	None
JLOC1	JLOC1_2061.1	1008	8e-25	443 - 502	100	60 / 60	plus
Harvest21	ABC33872	641	3e-25	577 - 636	100	60 / 60	plus
Harvest35	U35_38065	641	3e-25	577 - 636	100	60 / 60	plus

Contig Sequence (641 bp)

>U35_38065 641 Hv_44K_v2
GATAAAAAAGAGTGAGATTCAAGTACTGGACTCATTGTGCTGGAAGTTTGACCGAGAGGA
TCTCGCTATTACGCTACGAGGAATACAATTTCATTTGGACCACCTTAAAAGTATAACTTG
GTAAGTGATGATTGGAAAGACGCTGATCTTACTGAATGGAAGATCACAGAATAATTACAA
AAGCCAATTCAAAAAGATAGTTCTTCATGTGGTTTGTTTATGGTCAAATTTATGGAATAT
TTCACGAGTTGTTCTCTACCCTACACAATTACACAGGTATATATTTGAATTCTTCAATAT
AAGAACTATGTTAATTTTACAAAAACTATGCTATTTTTTAACATATACTAATATTTTTTT
GTGTTGCACAGGAGATGATTACTTCTTTTAGGTATAAGTTAGCCAACATACTATTATGTT
GGAAAACAAACACTACAGATATGACTACAAGCGTTGAACAAAGTGATGATGACACCGAGG
GAGATGCTGATGATATTCGGATATTGGAAAGTCTAGATGATATAAAAGAATTAAAACCGA
AAATCACAGTATTTATTGAAAATAAATACAGATCATTGATATCTATTCTTTCAAATAGGA
GCTTGAATGAGTTAACATGTGCACTCTGTAGCTTCATTACG

Homology of Contig U35_38065 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None