barSeed - Barley Seed Development Database

Probe CUST_11495_PI390587928

Source Contig U35_38067

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11495_PI390587928	Hv_44K_v2	AGTTAGTGACTGATAATCTAAGTACATGGGAAAAACTGGCCGAGGAGCGTGCTATTGTCG	465	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK357366	1330	2e-24	881 - 940	100	60 / 60	plus	None
MLOC	MLOC_75033.6	3907	2e-24	2186 - 2245	100	60 / 60	plus	None
MLOC	MLOC_75033.7	3992	2e-24	2186 - 2245	100	60 / 60	plus	None
MLOC	MLOC_75033.8	3678	2e-24	2186 - 2245	100	60 / 60	plus	None
MLOC	MLOC_75033.11	1468	2e-24	1106 - 1165	100	60 / 60	plus	None
MLOC	MLOC_75033.12	1556	2e-24	1106 - 1165	100	60 / 60	plus	None
MLOC	MLOC_75033.13	4954	2e-24	921 - 980	100	60 / 60	plus	ABC05690
MLOC	MLOC_75033.3	2893	2e-24	2238 - 2297	100	60 / 60	plus	None
MLOC	MLOC_75033.14	1484	2e-24	866 - 925	100	60 / 60	plus	None
MLOC	MLOC_75033.15	1398	2e-24	780 - 839	100	60 / 60	plus	None
MLOC	MLOC_75033.9	2314	2e-24	1827 - 1886	100	60 / 60	plus	None
MLOC	MLOC_75033.10	2170	2e-24	1753 - 1812	100	60 / 60	plus	None
MLOC	MLOC_75033.4	2807	2e-24	1797 - 1856	100	60 / 60	plus	None
MLOC	MLOC_75033.5	2892	2e-24	1812 - 1871	100	60 / 60	plus	None
MLOC	MLOC_75033.1	4210	2e-24	2243 - 2302	100	60 / 60	plus	None
MLOC	MLOC_75033.2	3966	2e-24	2157 - 2216	100	60 / 60	plus	None
Harvest21	ABC33877	644	3e-25	466 - 525	100	60 / 60	plus
Harvest35	U35_38067	644	3e-25	466 - 525	100	60 / 60	plus

Contig Sequence (644 bp)

>U35_38067 644 Hv_44K_v2
GTGAAGATGTCGATCGATTTGATCCTTTACTCGTAGAGGGGCAGGTATATTATGTGTGGC
AGATGCTCGCAGAACCAATTGTCAGAGATGGGGACTATTTGTTTGCAGATAGTCACTTTG
TGTGTCGTTTCAGCTCAGTGACAATAATCAATGAGATAAGAAATGTCAATGAGCAGCTGA
TCCCATTGTTCCCTCCATTTATGCCTTTTGACAAAGTTTGGGAGTTCACCCTTGATAATA
ATACATATGTTGATGTCAGTGGCATGGTTTTGTTTGTAAGTTCTATGGGACACAAGGACA
GTTTCTACAACCGAAGGATCCCAGTGAGAAATATCGTTCTGCTAGATGACACGTATATCT
ATCTTATGGTTTAGAATTATTTGAATAATTCAAAGATTTTATGTTTTTCTTCTAATATTA
CTTGATTTTGTAGCTACAATATTGTCAAGTTAGTTGTATGGGACAAGTTAGTGACTGATA
ATCTAAGTACATGGGAAAAACTGGCCGAGGAGCGTGCTATTGTCGTGGCAACAATGCTAC
GTGCAAACCGCATTGACCGTGGCCTGCATACTACGGACTATAGTAGGATGCACTTTGACC
CGAACATCATAGCCGCACATAAACTGAGGCAAAGGATCAATAAT

Homology of Contig U35_38067 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None