barSeed - Barley Seed Development Database

Probe CUST_11494_PI390587928

Source Contig U35_38068

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11494_PI390587928	Hv_44K_v2	CTACTTGTCTAGAAAATCACTCTCTCAGCTTATAGATGATGTCTGTGTAACAGCTCCACC	579	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.511	2.584	1.767	0.776	0.449	0.540
Raw	39.557	68.701	37.704	27.969	3.466	5.923

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55110.1	1326	2e-24	1160 - 1219	100	60 / 60	plus	ABC47592
MLOC	MLOC_55110.2	2184	2e-24	1192 - 1251	100	60 / 60	plus	ABC47592
Harvest21	ABC33878	642	3e-25	580 - 639	100	60 / 60	plus
Harvest35	U35_38068	642	3e-25	580 - 639	100	60 / 60	plus

Contig Sequence (642 bp)

>U35_38068 642 Hv_44K_v2
GGGTCCATAGGTCCTGTCTTGATAACTGGAGATCAACAAATGAAGGTTTTGCATTTTCAC
ATTGCACCGAGTGTCGGGCAGCATTCTTACTTCGTGCAAATGTTCCTCCAGATCGATGGT
GGCTAAGACTGAAGTTTCAACTTCTGGTTGCTAGAGATCACACATTGATCTTTTTCATTG
TACAACTGGTTGTTGTTTTCTTGGGTATGCTGGTGTACAGATTTTATGGAGATGAACTGC
TAGAAATGTTTGGCTATGAACAGCATCCTTACGCTTTTTATGCGTTGGCAATACTGGCTG
TTATTTTGGTTGGTTTGCTATATGGATTCTTCATAGCTATAATATGTGGACAGAGGATCA
CCGAACGGCACTACCATGTTCTTGCAAAGCAAGAGTTAACCAAGGAGTATATCGTAGAGG
ATCTTGAAGGGTCTGATCCAGTGCCAGACCTTGATCCTAGCCATGTCACGGAGTTGAGGA
CACTGGGGCTCTATTGAGCATAGCCGCATATAGCATCAGGTAGGCAGTTTAAGATCTTGT
TGAGTTAGAGCATTGTCTTAGTTTTTACGGCTGCATTTTCTACTTGTCTAGAAAATCACT
CTCTCAGCTTATAGATGATGTCTGTGTAACAGCTCCACCGCT

Homology of Contig U35_38068 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g03950.1	273	3e-87	protein\|zinc finger, C3HC4 type family protein, expressed
Brachypodium v1_2	Bradi3g02970.2	281	3e-86
Arabidopsis v10	AT1G50440.1	250	5e-73	RING/FYVE/PHD zinc finger superfamily protein \| chr1:18686099-18687646 FORWARD LENGTH=250