barSeed - Barley Seed Development Database

Probe CUST_1148_PI390587928

Source Contig U35_33120

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1148_PI390587928	Hv_44K_v2	CTTTAGAGTAAATTAGTTAGTGTATCTCGTCTCCTTCTCTAACATTGCAAATCTTGCAAC	163	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_4404.1	3855	2e-24	323 - 382	100	60 / 60	plus	ABC38480
MLOC	MLOC_4404.2	3878	2e-24	323 - 382	100	60 / 60	plus	ABC38480
MLOC	MLOC_4403.1	7337	2e-24	323 - 382	100	60 / 60	plus	ABC38480 ABC47840
Harvest35	U35_33120	738	3e-25	164 - 223	100	60 / 60	plus

Contig Sequence (738 bp)

>U35_33120 738 Hv_44K_v2
CCCTTCCGATAGATGCTCGAGCGGCCGCTCAGACTCTTACTACAGCACTTATTCACTGTT
TACTTCTACATTCCGATTAAAAGCACCTAGCTACAGGGAACCATTGTAACAAACTCTATA
TATGCTGTTTCGGCTTGCAAAGAAAGTAAGAGAAGAGATACAACTTTAGAGTAAATTAGT
TAGTGTATCTCGTCTCCTTCTCTAACATTGCAAATCTTGCAACAACCCAGGTAGAATACC
TAGGCCATGTTATTTCAGGCAAATGAGTTGCAACAAACCCCAAGGCAATTCAGGCAATGG
TACAATGGCCTATCCCAAAACAGTGTCAATACTCAGGGGTTTCCTTAGAATTACTGGTTA
TTACAGGAGGTTTGTGAAGGATTACGCAAAAAATTGCAGACCCCTACATGACAGCGGCCG
CTGGTCAAGTGGGATGCCTGGAAGTCCGTCGAAGCCAAATCCAAGGAGGAGGCAATGGCT
GACTACATCACCAAGGTGAAGCAGCTGCTTGAGGAGGCTGCCGCCGCGTCCGCTTCATCC
TAGGCCACAAGACCACAATCGCTATTATTGTCCTGGTGGTGCAGACATATGTGCCAATAA
ACACAAATAAATTCGAAGTACTAGTTGTTGTCAAGCTTATCATCGTTGTCGTGGATGTGT
AATTACGTTGAACAAGCCCTGTGATACATGAAAGTGCAATCTCAGTTTACGCCATGATTG
ATTAATACATGCCCTTCT

Homology of Contig U35_33120 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None