barSeed - Barley Seed Development Database

Probe CUST_11489_PI390587928

Source Contig U35_40385

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11489_PI390587928	Hv_44K_v2	ACATCAATAAAAATCCCGTCATGTGATGTTGATGTGACCGGCAGCAACATATTTGAACTA	62	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK362715	2775	7e-23	1249 - 1308	98	59 / 60	plus	ABC04144 ABC04430 ABC04431 ABC15220 ABC31625
MLOC	MLOC_61790.2	1367	7e-23	1111 - 1170	98	59 / 60	plus	ABC04144
JLOC1	JLOC1_40396.1	1799	4e-23	1478 - 1537	98	59 / 60	plus
Harvest21	ABC04144	1445	1e-23	1234 - 1293	98	59 / 60	plus	ABC04144
Harvest35	U35_40385	454	3e-25	63 - 122	100	60 / 60	minus
Harvest35	U35_183	1503	1e-23	1300 - 1359	98	59 / 60	plus
Harvest35	U35_168	1587	1e-23	1257 - 1316	98	59 / 60	plus

Contig Sequence (454 bp)

>U35_40385 454 Hv_44K_v2
TTTTTTTTTTTTTTTTTGTTTGAACAACTGTGAAGCAGCGATGCATCATCATTATATTGC
TTTAGTTCAAATATGTTGCTGCCGGTCACATCAACATCACATGACGGGATTTTTATTGAT
GTTATATATTGGTGGGAAATCACCAACCAAGTTGGAAACGTACTGGCAGATCGCTATTTA
TGCAGGGGGAAAGACATGAAGATCTACCGTTTGTCCGTTTGGTGTTCTCCCAGCATTGTG
GAGCTCATTTCCTCTTTCATAAAAAGTGGAACCTAGGATGATGATGATGTCTTGCCATCC
AACGTCAGCAGTACTTTGTATAGATCAGGGCGCCTGTCCCTGAATATCCCCCAGCCGTGT
CTCGTGGATTTGATCTCGTCCAAGATCTGGTGGCGGTGGCTATCCTTGAGATGGATAGGT
GCAAGATGTCACAATGGTTGGAACTATGGAAACA

Homology of Contig U35_40385 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None